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油菜(L.)缺氮胁迫下异戊烯基转移酶(IPT)基因家族的鉴定与表达分析

Identification and Expression Analysis of the Isopentenyl Transferase (IPT) Gene Family under Lack of Nitrogen Stress in Oilseed ( L.).

作者信息

Chen Jingdong, Wan Heping, Zhu Wenhui, Dai Xigang, Yu Yi, Zeng Changli

机构信息

College of Life Science, Jianghan University, Wuhan 430056, China.

College of Life Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

出版信息

Plants (Basel). 2023 May 30;12(11):2166. doi: 10.3390/plants12112166.

DOI:10.3390/plants12112166
PMID:37299144
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10255845/
Abstract

gene family members in and analyzing their expression under different exogenous hormones and abiotic stress treatments to provide a theoretical basis for clarifying their functions and molecular genetic mechanisms in nitrogen deficiency stress tolerance of . Using the Arabidopsis IPT protein as the seed sequence, combined with the IPT protein domain PF01715, 26 members of the gene family were identified from the whole genome of the rape variety ZS11. Additionally, the physicochemical properties and structures, phylogenetic relationships, synteny relationships, protein-protein interaction network, and gene ontology enrichment were analyzed. Based on transcriptome data, the expression patterns of the gene under different exogenous hormone and abiotic stress treatments were analyzed. We used the qPCR method to identify the relative expression level of genes that may be related to the stress resistance of rapeseed in transcriptome analysis under normal nitrogen (N: 6 mmol·L) and nitrogen deficiency (N: 0) conditions and analyzed its effect on rapeseed under nitrogen deficiency stress role in tolerance. In response to nitrogen deficiency signals, the gene showed a trend of up-regulation in shoots and down-regulation in roots, indicating that it may affect the process of nitrogen transport and redistribution to enhance the stress resistance of rapeseed to respond to the nitrogen deficiency stress. This study provides a theoretical basis for clarifying the function and molecular genetic mechanism of the gene family in nitrogen deficiency stress tolerance in rape.

摘要

研究油菜中的基因家族成员,并分析它们在不同外源激素和非生物胁迫处理下的表达情况,为阐明它们在油菜耐缺氮胁迫中的功能和分子遗传机制提供理论依据。以拟南芥IPT蛋白为种子序列,结合IPT蛋白结构域PF01715,从油菜品种中双11的全基因组中鉴定出26个该基因家族成员。此外,还分析了它们的理化性质和结构、系统发育关系、共线性关系、蛋白质-蛋白质相互作用网络以及基因本体富集情况。基于转录组数据,分析了该基因在不同外源激素和非生物胁迫处理下的表达模式。我们采用qPCR方法鉴定了在正常氮(N:6 mmol·L)和缺氮(N:0)条件下转录组分析中可能与油菜抗逆性相关的基因的相对表达水平,并分析了其在缺氮胁迫下对油菜耐逆性的作用。响应缺氮信号时,该基因在地上部呈现上调趋势,在根部呈现下调趋势,表明它可能影响氮素运输和再分配过程,以增强油菜对缺氮胁迫的抗逆性。本研究为阐明该基因家族在油菜耐缺氮胁迫中的功能和分子遗传机制提供了理论依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6045/10255845/10ae4e0fc749/plants-12-02166-g012.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6045/10255845/edee4afd230f/plants-12-02166-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6045/10255845/c92f6376b2cc/plants-12-02166-g008.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6045/10255845/73da2972e694/plants-12-02166-g011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6045/10255845/10ae4e0fc749/plants-12-02166-g012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6045/10255845/cde967894f2a/plants-12-02166-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6045/10255845/b6282768835a/plants-12-02166-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6045/10255845/4efcfd5d26bf/plants-12-02166-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6045/10255845/b0d9141ab81c/plants-12-02166-g004.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6045/10255845/dd2562772bd0/plants-12-02166-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6045/10255845/edee4afd230f/plants-12-02166-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6045/10255845/c92f6376b2cc/plants-12-02166-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6045/10255845/4f825e04e381/plants-12-02166-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6045/10255845/2a615de150a1/plants-12-02166-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6045/10255845/73da2972e694/plants-12-02166-g011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6045/10255845/10ae4e0fc749/plants-12-02166-g012.jpg

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