Wagner Naama, Ben-Meir Daniella, Teper Doron, Pupko Tal
The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel.
Department of Plant Pathology and Weed Research, Institute of Plant Protection Agricultural Research Organization (ARO), Volcani Institute, Rishon LeZion, Israel.
Front Plant Sci. 2023 Jun 2;14:1155341. doi: 10.3389/fpls.2023.1155341. eCollection 2023.
pv. pelargonii is the causative agent of bacterial blight in geranium ornamental plants, the most threatening bacterial disease of this plant worldwide. is the causative agent of angular leaf spot in strawberries, where it poses a significant threat to the strawberry industry. Both pathogens rely on the type III secretion system and the translocation of effector proteins into the plant cells for their pathogenicity. Effectidor is a freely available web server we have previously developed for the prediction of type III effectors in bacterial genomes. Following a complete genome sequencing and assembly of an Israeli isolate of pv. pelargonii - strain 305, we used Effectidor to predict effector encoding genes both in this newly sequenced genome, and in strain Fap21, and validated its predictions experimentally. Four and two genes in and , respectively, contained an active translocation signal that allowed the translocation of the reporter AvrBs2 that induced the hypersensitive response in pepper leaves, and are thus considered validated novel effectors. These newly validated effectors are XopBB, XopBC, XopBD, XopBE, XopBF, and XopBG.
天竺葵黄单胞菌是天竺葵观赏植物细菌性叶枯病的病原体,是全球该植物最具威胁性的细菌性病害。草莓角斑病菌是草莓角斑病的病原体,对草莓产业构成重大威胁。这两种病原体都依赖III型分泌系统和效应蛋白向植物细胞内的转运来实现其致病性。Effectidor是我们之前开发的一个免费网络服务器,用于预测细菌基因组中的III型效应蛋白。在对一株以色列天竺葵黄单胞菌菌株305进行全基因组测序和组装后,我们使用Effectidor预测这个新测序基因组以及Fap21菌株中的效应蛋白编码基因,并通过实验验证其预测结果。天竺葵黄单胞菌和草莓角斑病菌中分别有四个和两个基因含有一个活性转运信号,该信号允许报告基因AvrBs2转运,从而在辣椒叶片中引发过敏反应,因此被认为是经过验证的新型效应蛋白。这些新验证的效应蛋白是XopBB、XopBC、XopBD、XopBE、XopBF和XopBG。