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应用机器学习预测成年患者伏立康唑的血药谷浓度。

Prediction of plasma trough concentration of voriconazole in adult patients using machine learning.

机构信息

Department of Pharmacy, the First Affiliated Hospital of Army Medical University (Third Military Medical University), Gao Tanyan Street 29#, Sha Pingba, Chongqing 400038, PR China.

Department of Pharmacy, the First Affiliated Hospital of Army Medical University (Third Military Medical University), Gao Tanyan Street 29#, Sha Pingba, Chongqing 400038, PR China.

出版信息

Eur J Pharm Sci. 2023 Sep 1;188:106506. doi: 10.1016/j.ejps.2023.106506. Epub 2023 Jun 24.

Abstract

OBJECTIVE

Plasma trough concentration of voriconazole (VCZ) was associated with its toxicity and efficacy. However, the nonlinear pharmacokinetic characteristics of VCZ make it difficult to determine the relationship between clinical characteristics and its concentration. We intended to present a machine learning (ML)-based method to predict toxic plasma trough concentration of VCZ (>5 μg/mL).

METHODS

A single center retrospective study was conducted. Three ML algorithms were used to estimate the concentration in adult patients, including random forest (RF), gradient boosting (GB), and extreme gradient boosting (XGBoost). The importance of variables was recognized by the SHapley Additive exPlanations (SHAP) method. In addition, an external validation set was used to validate the robustness of models.

RESULTS

A total of 1318 VCZ plasma concentration were included, with 33 variables enrolled in the model. Nine classification models were developed using the RF, GB, and XGBoost algorithms. Most models performed well for both the training set and test set, with an average balanced accuracy (BA) of 0.704 and an average accuracy (ACC) of 0.788. In addition, the average Matthews correlation coefficient value reached 0.484, which indicated the predicted values are meaningful. Based on the average BA and ACC values, the predictive ability of the models can be ranked from best to worst as follows: younger adult models > mixed models > elderly models, and XGBoost models > GBT models > RF models. The SHAP results showed that the top five influencing factors in younger adult patients (<60 years) were albumin, total bile acid (TBA), platelets count, age, and inflammation, while the top five influencing factors in elderly patients were albumin, TBA, aspartate aminotransferase, creatinine, and alanine aminotransferase. Furthermore, the prediction of external validation set for VCZ concentrations verified the high reliability of the models, for the ACC value of 0.822 by the best model.

CONCLUSIONS

The ML models can be reliable tools for predicting toxic concentration exposure of VCZ. The SHAP results may provide useful guidelines for dosage adjustment of VCZ.

摘要

目的

伏立康唑(VCZ)的血药谷浓度与药物毒性和疗效相关。然而,VCZ 的非线性药代动力学特征使其难以确定其浓度与临床特征之间的关系。我们旨在提出一种基于机器学习(ML)的方法来预测 VCZ 的毒性血药谷浓度(>5μg/ml)。

方法

进行了一项单中心回顾性研究。使用三种 ML 算法(随机森林(RF)、梯度提升(GB)和极端梯度提升(XGBoost))来估算成人患者的浓度。采用 SHapley Additive exPlanations(SHAP)方法确定变量的重要性。此外,还使用外部验证集来验证模型的稳健性。

结果

共纳入 1318 例 VCZ 血药浓度,模型中纳入 33 个变量。使用 RF、GB 和 XGBoost 算法分别建立了 9 个分类模型。大多数模型在训练集和测试集上的表现都很好,平均平衡准确率(BA)为 0.704,平均准确率(ACC)为 0.788。此外,平均马修斯相关系数值达到 0.484,表明预测值是有意义的。根据平均 BA 和 ACC 值,模型的预测能力可按从好到差的顺序排列如下:年轻成年模型>混合模型>老年模型,XGBoost 模型>GBT 模型>RF 模型。SHAP 结果表明,年轻成年患者(<60 岁)中前五个影响因素是白蛋白、总胆汁酸(TBA)、血小板计数、年龄和炎症,而老年患者中前五个影响因素是白蛋白、TBA、天冬氨酸转氨酶、肌酐和丙氨酸转氨酶。此外,最佳模型对 VCZ 浓度外部验证集的预测验证了模型的高可靠性,ACC 值为 0.822。

结论

ML 模型可以成为预测 VCZ 毒性浓度暴露的可靠工具。SHAP 结果可为 VCZ 剂量调整提供有用的指导。

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