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协调非经典过氧化物酶中的 N 端血红素。

Coordination of the N-Terminal Heme in the Non-Classical Peroxidase from .

机构信息

Microbial Stress Lab, UCIBIO-Applied Molecular Biosciences Unit, Department of Chemistry, NOVA School of Science and Technology, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal.

Associate Laboratory i4HB-Institute for Health and Bioeconomy, NOVA School of Science and Technology, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal.

出版信息

Molecules. 2023 Jun 7;28(12):4598. doi: 10.3390/molecules28124598.

DOI:10.3390/molecules28124598
PMID:37375153
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10301912/
Abstract

The non-classical bacterial peroxidase from , YhjA, is proposed to deal with peroxidative stress in the periplasm when the bacterium is exposed to anoxic environments, defending it from hydrogen peroxide and allowing it to thrive under those conditions. This enzyme has a predicted transmembrane helix and is proposed to receive electrons from the quinol pool in an electron transfer pathway involving two hemes (NT and E) to accomplish the reduction of hydrogen peroxide in the periplasm at the third heme (P). Compared with classical bacterial peroxidases, these enzymes have an additional N-terminal domain binding the NT heme. In the absence of a structure of this protein, several residues (M82, M125 and H134) were mutated to identify the axial ligand of the NT heme. Spectroscopic data demonstrate differences only between the YhjA and YhjA M125A variant. In the YhjA M125A variant, the NT heme is high-spin with a lower reduction potential than in the wild-type. Thermostability was studied by circular dichroism, demonstrating that YhjA M125A is thermodynamically more unstable than YhjA, with a lower T (43 °C vs. 50 °C). These data also corroborate the structural model of this enzyme. The axial ligand of the NT heme was validated to be M125, and mutation of this residue was proven to affect the spectroscopic, kinetic, and thermodynamic properties of YhjA.

摘要

推测 中的非经典细菌过氧化物酶 YhjA 可在细菌暴露于缺氧环境时应对细胞周质中的过氧化物应激,使细菌免受过氧化氢的侵害,并使其在这些条件下茁壮成长。该酶具有预测的跨膜螺旋,据推测它可以从包含两个血红素(NT 和 E)的醌池接收电子,以完成细胞周质中第三个血红素(P)处的过氧化氢还原。与经典细菌过氧化物酶相比,这些酶具有额外的结合 NT 血红素的 N 端结构域。由于该蛋白的结构尚不清楚,因此突变了几个残基(M82、M125 和 H134)以鉴定 NT 血红素的轴向配体。光谱数据仅表明 YhjA 和 YhjA M125A 变体之间存在差异。在 YhjA M125A 变体中,NT 血红素为高自旋,其还原电位低于野生型。通过圆二色性研究了热稳定性,表明 YhjA M125A 比 YhjA 热力学上更不稳定,T(43°C 对 50°C)更低。这些数据也证实了该酶的结构模型。NT 血红素的轴向配体被确认为 M125,该残基的突变被证明会影响 YhjA 的光谱、动力学和热力学性质。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e41/10301912/4a440b14ec73/molecules-28-04598-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e41/10301912/205f08a9ad4a/molecules-28-04598-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e41/10301912/a7bb241090f8/molecules-28-04598-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e41/10301912/2f3ede122859/molecules-28-04598-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e41/10301912/fa42d386d4fa/molecules-28-04598-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e41/10301912/4a440b14ec73/molecules-28-04598-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e41/10301912/205f08a9ad4a/molecules-28-04598-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e41/10301912/a7bb241090f8/molecules-28-04598-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e41/10301912/2f3ede122859/molecules-28-04598-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e41/10301912/fa42d386d4fa/molecules-28-04598-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e41/10301912/4a440b14ec73/molecules-28-04598-g005.jpg

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本文引用的文献

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