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分子动力学揭示百里香酚和香豆素基疏水型低共熔溶剂中结构和动力学异质性的起源

Origin of structural and dynamic heterogeneity in thymol and coumarin-based hydrophobic deep eutectic solvents as revealed by molecular dynamics.

作者信息

Malik Akshay, Kashyap Hemant K

机构信息

Department of Chemistry, Indian Institute of Technology Delhi, Hauz Khas, New Delhi 110016, India.

出版信息

Phys Chem Chem Phys. 2023 Jul 26;25(29):19693-19705. doi: 10.1039/d3cp01770b.

Abstract

Hydrophobic deep eutectic solvents (HDESs) have recently emerged as a class of water-immiscible solvents with greener starting materials and inherent hydrophobic character, opening the gates to various new promising applications. Herein, we have carried out all-atom molecular dynamics simulations to comprehend the bulk phase structural organization and dynamic behavior of thymol and coumarin-based HDESs at two molar ratios of the constituent components. The simulated X-ray and neutron scattering structure functions (()s) indicate a prepeak signifying that these HDESs possess nanoscale heterogeneity or intermediate range ordering. The decomposition of the total ()s based on polarity reveals that clustering of the polar group present in thymol and coumarin leads to the presence of the prepeak which also has small contributions from the apolar-apolar correlations. The intermolecular hydrogen bonding network between thymol-coumarin and thymol-thymol mainly guides the arrangement of the HDESs. We find a stronger hydrogen bond between the carbonyl oxygen of coumarin and the hydroxyl hydrogen of thymol, marked by the longer hydrogen bond lifetime. In contrast, the shorter lifetime of the hydrogen bond between the hydroxyl oxygen and the hydroxyl hydrogen of thymol suggests a weaker hydrogen bonding. On changing the thymol : coumarin molar ratio from 1 : 1 to 2 : 1, the average lifetimes of both the hydrogen bonds decrease, suggesting stronger hydrogen bonds in the 1 : 1 HDES. The translational dynamics of thymol and coumarin become faster in the 2 : 1 thymol : coumarin HDES. A slightly stronger caging effect is observed for coumarin in comparison to thymol molecules. From the analysis of the non-Gaussian parameter, we observe the presence of heterogeneity in the translational displacements of thymol and coumarin molecules. Furthermore, the computed self-van Hove correlation functions reveal that thymol and coumarin molecules cover more distances than the ideal diffusive displacements, confirming the presence of dynamic heterogeneity.

摘要

疏水性低共熔溶剂(HDESs)最近作为一类与水不混溶的溶剂出现,其起始原料更环保且具有固有的疏水性,为各种新的有前景的应用打开了大门。在此,我们进行了全原子分子动力学模拟,以了解百里香酚和香豆素基HDESs在两种组成成分摩尔比下的本体相结构组织和动态行为。模拟的X射线和中子散射结构函数(()s)表明存在一个预峰,这意味着这些HDESs具有纳米级的不均匀性或中程有序性。基于极性对总()s的分解表明,百里香酚和香豆素中存在的极性基团的聚集导致了预峰的出现,非极性-非极性相关性也对其有小的贡献。百里香酚-香豆素和百里香酚-百里香酚之间的分子间氢键网络主要指导了HDESs的排列。我们发现香豆素的羰基氧与百里香酚的羟基氢之间存在更强的氢键,其氢键寿命更长。相比之下,百里香酚的羟基氧与羟基氢之间的氢键寿命较短,表明氢键较弱。当将百里香酚:香豆素的摩尔比从1:1变为2:1时,两种氢键的平均寿命均降低,这表明在1:1的HDES中氢键更强。在2:1的百里香酚:香豆素HDES中,百里香酚和香豆素的平移动力学变得更快。与百里香酚分子相比,观察到香豆素的笼效应略强。通过对非高斯参数的分析,我们观察到百里香酚和香豆素分子的平移位移中存在不均匀性。此外,计算得到的自范霍夫关联函数表明,百里香酚和香豆素分子覆盖的距离比理想扩散位移更远,证实了动态不均匀性的存在。

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