Department of Physical and Chemical Sciences, Università degli Studi dell'Aquila, I-67100 L'Aquila, Italy.
Istituto di Cristallografia, Consiglio Nazionale delle Ricerche, I-70126 Bari, Italy.
J Phys Chem B. 2023 Jul 27;127(29):6487-6499. doi: 10.1021/acs.jpcb.3c00935. Epub 2023 Jul 13.
Deep eutectic solvents (DESs) are mixtures of two or more pure compounds (e.g., Lewis or Brønsted acids and bases, anionic and/or cationic species) in a well-defined stoichiometric proportion, with a melting point lower to that of an ideal liquid mixture. These neoteric solvents are highly tunable through varying the structure or relative ratio of parent components and have been evaluated as solvents able to improve biomolecules' performance, specifically their stability and biocatalytic properties. Inspired by a recent crystallographic study, we have explored through molecular dynamics (MD) simulations the dynamic properties of two different proteins (hen egg-white lysozyme and the human VH antibody fragment HEL4) in a (20% w/w) hydrated solution of choline chloride-glycerol (1:2). We have developed proper force fields to account for DES, protein, and DES-protein interactions, which have been calibrated using pair distribution function measurements of pure DES solutions. MD results show that the presence of DES quenches the protein motion, increasing the rigidity of the overall protein structure. Specific interactions among DES components and protein residues, such as those between choline ions and two Tryptophan residues of lysozyme, may amplify the protein-DES interactions and lead to protein crystallization in the presence of hydrated DES. These findings open new horizons to improve or achieve control on protein properties by a proper choice of hydrated DESs used as solvents.
深共熔溶剂 (DESs) 是两种或多种纯化合物(例如路易斯酸和碱、阴离子和/或阳离子物种)在明确化学计量比例下的混合物,其熔点低于理想液态混合物。这些新型溶剂可以通过改变母体成分的结构或相对比例进行高度调节,并已被评估为能够提高生物分子性能的溶剂,特别是它们的稳定性和生物催化性能。受最近一项晶体学研究的启发,我们通过分子动力学 (MD) 模拟探索了两种不同蛋白质(鸡卵清溶菌酶和人 VH 抗体片段 HEL4)在氯化胆碱-甘油(1:2)的 20%w/w 水合溶液中的动态特性。我们开发了适当的力场来描述 DES、蛋白质和 DES-蛋白质相互作用,这些力场已经使用纯 DES 溶液的配分函数测量进行了校准。MD 结果表明,DES 的存在会使蛋白质运动猝灭,从而增加整体蛋白质结构的刚性。DES 成分与蛋白质残基之间的特定相互作用,例如胆碱离子与溶菌酶中两个色氨酸残基之间的相互作用,可能会放大蛋白质-DES 相互作用,并导致在水合 DES 存在下蛋白质结晶。这些发现为通过选择适当的水合 DES 作为溶剂来改善或控制蛋白质性质开辟了新的前景。