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自发性脑出血关键基因的鉴定及疾病损伤的预防:LASSO 和 SVM 回归。

Identification of key genes in spontaneous cerebral hemorrhage and prevention of disease damage: LASSO and SVM regression.

机构信息

Department of Neurosurgery, The Second Affiliated Hospital of Nantong University, Nantong First People's Hospital, No. 6 Haier Lane North Road, Nantong 226001, China.

Department of Neurosurgery, The Second Affiliated Hospital of Nantong University, Nantong First People's Hospital, No. 6 Haier Lane North Road, Nantong 226001, China.

出版信息

Prev Med. 2023 Sep;174:107633. doi: 10.1016/j.ypmed.2023.107633. Epub 2023 Jul 18.

Abstract

Prevention is more important than treatment, and the incidence of intracerebral hemorrhage can be effectively reduced by intervening on the risk factors of intracerebral hemorrhage. By studying the risk factors of spontaneous intracerebral hemorrhage, we can identify the risk factors to achieve the target of treatment and prevention. Through the use of the Least Absolute Shrinkage and Selection Operator (LASSO) and the Support Vector Machine (SVM), the two essential SICH-related genes, NUAK1 and ERO1L, were eliminated from consideration. A Venn analysis was performed, and based on the two important modules, it found that SICH was related with four critical genes: VCM1, CRNDE, COL6A2, and HSPB6. One gene (NUAK1) was dramatically downregulated in the illness group compared to the control group, whereas three essential genes (ERO1L, VCAM1, and COL6A2) were significantly upregulated in the disease group. In the end, the genes ERO1L, VCAM1, COL6A2, and NUAK1 were shown to be the most important ones for SICH. It is anticipated that these genes will become novel biomarkers as well as targets for the development of new pharmacotherapies for SICH.

摘要

预防胜于治疗,通过干预脑出血的危险因素,可以有效降低脑出血的发病率。通过研究自发性脑出血的危险因素,可以明确治疗和预防的靶点。通过使用最小绝对值收缩和选择算子(LASSO)和支持向量机(SVM),排除了与 SICH 相关的两个关键基因 NUAK1 和 ERO1L。进行了 Venn 分析,基于两个重要模块,发现 SICH 与四个关键基因有关:VCM1、CRNDE、COL6A2 和 HSPB6。与对照组相比,疾病组中有一个基因(NUAK1)显著下调,而三个关键基因(ERO1L、VCAM1 和 COL6A2)在疾病组中显著上调。最后,发现 ERO1L、VCAM1、COL6A2 和 NUAK1 这四个基因对 SICH 最重要。预计这些基因将成为治疗 SICH 的新型生物标志物和新药物靶点。

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