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帕金森病中铜死亡簇的鉴定及综合分析

Identification of Cuproptosis Clusters and Integrative Analyses in Parkinson's Disease.

作者信息

Zhang Moxuan, Meng Wenjia, Liu Chong, Wang Huizhi, Li Renpeng, Wang Qiao, Gao Yuan, Zhou Siyu, Du Tingting, Yuan Tianshuo, Shi Lin, Han Chunlei, Meng Fangang

机构信息

Beijing Neurosurgical Institute, Capital Medical University, Beijing 100070, China.

Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing 100070, China.

出版信息

Brain Sci. 2023 Jun 30;13(7):1015. doi: 10.3390/brainsci13071015.

DOI:10.3390/brainsci13071015
PMID:37508947
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10377639/
Abstract

Parkinson's disease (PD) is the second most common neurodegenerative disease; it mainly occurs in the elderly population. Cuproptosis is a newly discovered form of regulated cell death involved in the progression of various diseases. Combining multiple GEO datasets, we analyzed the expression profile and immunity of cuproptosis-related genes (CRGs) in PD. Dysregulated CRGs and differential immune responses were identified between PD and non-PD substantia nigra. Two CRG clusters were defined in PD. Immune analysis suggested that CRG cluster 1 was characterized by a high immune response. The enrichment analysis showed that CRG cluster 1 was significantly enriched in immune activation pathways, such as the Notch pathway and the JAK-STAT pathway. KIAA0319, AGTR1, and SLC18A2 were selected as core genes based on the LASSO analysis. We built a nomogram that can predict the occurrence of PD based on the core genes. Further analysis found that the core genes were significantly correlated with tyrosine hydroxylase activity. This study systematically evaluated the relationship between cuproptosis and PD and established a predictive model for assessing the risk of cuproptosis subtypes and the outcome of PD patients. This study provides a new understanding of PD-related molecular mechanisms and provides new insights into the treatment of PD.

摘要

帕金森病(PD)是第二常见的神经退行性疾病;主要发生在老年人群中。铜死亡是一种新发现的受调控的细胞死亡形式,与多种疾病的进展有关。结合多个基因表达综合数据库(GEO)数据集,我们分析了帕金森病中铜死亡相关基因(CRGs)的表达谱和免疫情况。在帕金森病和非帕金森病黑质之间鉴定出CRGs失调和免疫反应差异。在帕金森病中定义了两个CRG簇。免疫分析表明,CRG簇1的特征是免疫反应高。富集分析表明,CRG簇1在免疫激活途径中显著富集,如Notch途径和JAK-STAT途径。基于套索分析选择KIAA0319、AGTR1和SLC18A2作为核心基因。我们构建了一个基于核心基因预测帕金森病发生的列线图。进一步分析发现,核心基因与酪氨酸羟化酶活性显著相关。本研究系统评估了铜死亡与帕金森病之间的关系,并建立了一个评估铜死亡亚型风险和帕金森病患者预后的预测模型。本研究为帕金森病相关分子机制提供了新的认识,并为帕金森病的治疗提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/4c0aeda74183/brainsci-13-01015-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/4bf9d2cecc98/brainsci-13-01015-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/a0b9ab0848b1/brainsci-13-01015-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/737493d27c1d/brainsci-13-01015-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/30bea2fc3290/brainsci-13-01015-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/d5be82577ff9/brainsci-13-01015-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/9eee1fce485a/brainsci-13-01015-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/1a980ce1db3a/brainsci-13-01015-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/c638e02a8978/brainsci-13-01015-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/1f4b8f6ee949/brainsci-13-01015-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/4c0aeda74183/brainsci-13-01015-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/4bf9d2cecc98/brainsci-13-01015-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/a0b9ab0848b1/brainsci-13-01015-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/737493d27c1d/brainsci-13-01015-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/30bea2fc3290/brainsci-13-01015-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/d5be82577ff9/brainsci-13-01015-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/9eee1fce485a/brainsci-13-01015-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/1a980ce1db3a/brainsci-13-01015-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/c638e02a8978/brainsci-13-01015-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/1f4b8f6ee949/brainsci-13-01015-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5941/10377639/4c0aeda74183/brainsci-13-01015-g010.jpg

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本文引用的文献

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Copper Induces Cognitive Impairment in Mice via Modulation of Cuproptosis and CREB Signaling.铜通过调节铜死亡和 CREB 信号诱导小鼠认知障碍。
Nutrients. 2023 Feb 15;15(4):972. doi: 10.3390/nu15040972.
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Dyslexia associated gene regulates cell cycle during human neuroepithelial cell development.阅读障碍相关基因在人类神经上皮细胞发育过程中调节细胞周期。
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Single-cell genomic profiling of human dopamine neurons identifies a population that selectively degenerates in Parkinson's disease.
基于生物信息学分析鉴定帕金森病中的铜死亡相关关键基因和通路。
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Immune responses in the Parkinson's disease brain.帕金森病大脑中的免疫反应。
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Copper induces cell death by targeting lipoylated TCA cycle proteins.铜通过靶向脂酰化 TCA 循环蛋白诱导细胞死亡。
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Copper-induced cell death.铜诱导的细胞死亡。
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Connecting copper and cancer: from transition metal signalling to metalloplasia.连接铜与癌症:从过渡金属信号到金属瘤形成。
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VMAT2 availability in Parkinson's disease with probable REM sleep behaviour disorder.VMAT2 在帕金森病伴 REM 睡眠行为障碍可能中的可及性。
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