Yasuzawa Yosuke, Shibuya Risa, Senga Yukako, Miyafusa Takamitsu, Honda Shinya
Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Japan.
Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan.
FEBS Open Bio. 2023 Oct;13(10):1910-1921. doi: 10.1002/2211-5463.13692. Epub 2023 Aug 24.
Improving protein stability is important for industrial applications, and one promising method for achieving this is backbone circularization. As connector length affects stability, predicting and elucidating a more stable connector length is necessary for development of the backbone circularization method. However, the relationship between connector length and protein stability has not been completely elucidated. Here, we determined the most stable connector length for granulocyte colony-stimulating factor by changing one residue at a time to produce connector length variants and then measuring their thermal stability. Analysis of the local structures obtained from the predicted structures of the circularized variants revealed that an approach using helix length, dihedral backbone angle, and number of unbonded hydrogen bond donors and acceptors is suitable for identifying connector lengths with higher stability.
提高蛋白质稳定性对于工业应用很重要,而实现这一目标的一种有前景的方法是主链环化。由于连接子长度会影响稳定性,因此预测和阐明更稳定的连接子长度对于主链环化方法的开发是必要的。然而,连接子长度与蛋白质稳定性之间的关系尚未完全阐明。在这里,我们通过一次改变一个残基来产生连接子长度变体,然后测量它们的热稳定性,从而确定了粒细胞集落刺激因子最稳定的连接子长度。对从环化变体的预测结构获得的局部结构进行分析表明,使用螺旋长度、二面角主链角以及未键合氢键供体和受体数量的方法适用于识别具有更高稳定性的连接子长度。