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仔猪空肠中与氧化应激相关的长链非编码RNA的鉴定及功能预测

Identification and functional prediction of long non-coding RNAs related to oxidative stress in the jejunum of piglets.

作者信息

Li Jinbao, Zhang Jianmin, Jin Xinlin, Li Shiyin, Du Yingbin, Zeng Yongqing, Wang Jin, Chen Wei

机构信息

Key Laboratory of Efficient Utilization of Non-grain Feed Resources (Co-construction by Ministry and Province), Ministry of Agriculture and Rural Affairs, Shandong Provincial Key Laboratory of Animal Biotechnology and Disease Control and Prevention, College of Animal Science and Technology, Shandong Agricultural University, Tai'an City, 271018, China.

出版信息

Anim Biosci. 2024 Feb;37(2):193-202. doi: 10.5713/ab.23.0202. Epub 2023 Aug 25.

Abstract

OBJECTIVE

Oxidative stress (OS) is a pathological process arising from the excessive production of free radicals in the body. It has the potential to alter animal gene expression and cause damage to the jejunum. However, there have been few reports of changes in the expression of long noncoding RNAs (lncRNAs) in the jejunum in piglets under OS. The purpose of this research was to examine how lncRNAs in piglet jejunum change under OS.

METHODS

The abdominal cavities of piglets were injected with diquat (DQ) to produce OS. Raw reads were downloaded from the SRA database. RNA-seq was utilized to study the expression of lncRNAs in piglets under OS. Additionally, six randomly selected lncRNAs were verified using quantitative real-time polymerase chain reaction (qRT‒PCR) to examine the mechanism of oxidative damage.

RESULTS

A total of 79 lncRNAs were differentially expressed (DE) in the treatment group compared to the negative control group. The target genes of DE lncRNAs were enriched in gene ontology (GO) terms and Kyoto encyclopedia of genes and genomes (KEGG) signaling pathways. Chemical carcinogenesis-reactive oxygen species, the Foxo signaling pathway, colorectal cancer, and the AMPK signaling pathway were all linked to OS.

CONCLUSION

Our results demonstrated that DQ-induced OS causes differential expression of lncRNAs, laying the groundwork for future research into the processes involved in the jejunum's response to OS.

摘要

目的

氧化应激(OS)是机体自由基产生过多引发的病理过程。它有可能改变动物基因表达并对空肠造成损伤。然而,关于氧化应激状态下仔猪空肠中长链非编码RNA(lncRNA)表达变化的报道较少。本研究的目的是探究仔猪空肠中的lncRNA在氧化应激状态下如何变化。

方法

向仔猪腹腔注射百草枯(DQ)以产生氧化应激。从SRA数据库下载原始读数。利用RNA测序研究氧化应激状态下仔猪lncRNA的表达。此外,随机选择6个lncRNA,使用定量实时聚合酶链反应(qRT-PCR)进行验证,以研究氧化损伤的机制。

结果

与阴性对照组相比,处理组共有79个lncRNA差异表达(DE)。差异表达lncRNA的靶基因在基因本体论(GO)术语和京都基因与基因组百科全书(KEGG)信号通路中富集。化学致癌-活性氧、Foxo信号通路、结直肠癌和AMPK信号通路均与氧化应激有关。

结论

我们的结果表明,DQ诱导的氧化应激导致lncRNA差异表达,为今后研究空肠对氧化应激反应过程奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/415b/10766486/6832cc1dbed1/ab-23-0202f1.jpg

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