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DCDB:海豚草族染色体数据库(毛茛科):结构、利用及最新进展。

DCDB: Chromosome Database of Tribe Delphinieae (Ranunculaceae): Structure, Exploitation, and Recent Development.

机构信息

BioC (GReB, IRBio) - Laboratori de Botànica, Facultat de Farmàcia i Ciències de l'Alimentació, Universitat de Barcelona, Barcelona, Catalonia, Spain.

Institut Botànic de Barcelona (IBB, CSIC-Ajuntament de Barcelona), Barcelona, Catalonia, Spain.

出版信息

Methods Mol Biol. 2023;2703:173-192. doi: 10.1007/978-1-0716-3389-2_13.

DOI:10.1007/978-1-0716-3389-2_13
PMID:37646945
Abstract

An updated (and now online) version of the former chromosome database of tribe Delphinieae (Ranunculaceae) is presented ( http://www.delphinieae.online ). This new version is the result of an accurate, exhaustive literature and Internet research, by adding chromosome counts and all related karyological information for the genera Aconitum L., Gymnaconitum (Stapf) Wei Wang & Z. D. Chen, Delphinium L. (including Staphisagria Spach), Consolida (DC.) S. F. Gray and Aconitella Spach, accumulated during the approximately last 25 years and that comprise worldwide published data from 1889 to 2021. The Delphinieae Chromosome Database (DCDB) (last updated 31.12.2021) contains a total number of 3435 reports belonging to 425 species (503 taxa), which represents 48.6% of the total species of the tribe (an increase of c. 213% and 32% compared with the 1097 and 2598 reports gathered in the 1999 and 2016 versions, respectively). This increase is due both to chromosome research progress and to improved information capture system. Moreover, recent taxonomic advances, synonymization, and new phylogenetic criteria have also been considered.The DCDB database provides the most complete currently available information on published chromosome numbers, ploidy-level estimates, and other karyological data of Delphinieae, and it is aimed to be useful for the building of cytotaxonomical databases and for specific research ongoing projects of systematics and evolution of Ranunculaceae. DCDB includes two levels of taxonomic resolution, published name (original and standardized form) and database accepted name (based on either Plants of the World - POWO or expert specialist criteria), as well as the geographic origin of each count (country, locality, geographic coordinates, elevation, or ecological information when reported in the original publication), associated karyological data if originally provided (studied material type, graphic information, chromosome measures and formulas, satellites, B chromosomes, other cytogenetic techniques used, etc.), voucher information and reference (with DOI and other links to access the original document). An effort to check the original sources and to search in grey literature allowed to indicate the counts that appear to be registered twice.

摘要

一个更新的(现在是在线的)前部落 Delphinieae (毛茛科) 的染色体数据库的版本(http://www.delphinieae.online)。这个新版本是通过准确、详尽的文献和互联网研究的结果,增加了染色体计数和所有相关的核型信息的结果,包括 Aconitum L.、Gymnaconitum (Stapf) Wei Wang & Z. D. Chen、Delphinium L.(包括 Staphisagria Spach)、Consolida (DC.) S. F. Gray 和 Aconitella Spach,这些信息是在过去大约 25 年中积累的,包括 1889 年至 2021 年全球发表的数据。Delphinieae 染色体数据库(DCDB)(最后更新日期为 2021 年 12 月 31 日)包含 3435 个报告,属于 425 个物种(503 个分类单元),占该部落总物种数的 48.6%(与 1999 年和 2016 年版本中收集的 1097 个和 2598 个报告相比,分别增加了约 213%和 32%)。这种增加既归因于染色体研究的进展,也归因于改进的信息捕获系统。此外,最近的分类学进展、同义词化和新的系统发育标准也被考虑在内。DCDB 数据库提供了关于 Delphinieae 已发表的染色体数、倍性估计和其他核型数据的最完整的现有信息,旨在为建立细胞分类学数据库和正在进行的毛茛科系统发育和进化的特定研究项目提供有用的信息。DCDB 包括两个层次的分类分辨率,发表的名称(原始和标准化形式)和数据库接受的名称(基于 Plants of the World - POWO 或专家专家标准),以及每个计数的地理来源(国家、地点、地理坐标、海拔或在原始出版物中报告的生态信息),如果最初提供的相关核型数据(研究材料类型、图形信息、染色体测量和公式、卫星、B 染色体、使用的其他细胞遗传学技术等),凭证信息和参考(带有 DOI 和其他链接以访问原始文档)。努力检查原始来源并在灰色文献中搜索,以确定似乎被重复登记的计数。

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本文引用的文献

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2
Recurrent gene duplication in the angiosperm tribe Delphinieae (Ranunculaceae) inferred from intracellular gene transfer events and heteroplasmic mutations in the plastid matK gene.被子植物族海豚草族(毛茛科)中由质体 matK 基因的胞内基因转移事件和异质突变推断出的基因重复。
Sci Rep. 2020 Feb 17;10(1):2720. doi: 10.1038/s41598-020-59547-6.
3
FISH-aimed karyotype analysis in Aconitum subgen. Aconitum reveals excessive rDNA sites in tetraploid taxa.
乌头亚属乌头中针对荧光原位杂交的核型分析揭示了四倍体类群中过量的核糖体DNA位点。
Protoplasma. 2018 Sep;255(5):1363-1372. doi: 10.1007/s00709-018-1238-9. Epub 2018 Mar 14.
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A proposal for a multivariate quantitative approach to infer karyological relationships among taxa.一种用于推断分类群间核型关系的多变量定量方法的提议。
Comp Cytogenet. 2014 Dec 10;8(4):337-49. doi: 10.3897/CompCytogen.v8i4.8564. eCollection 2014.
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The Chromosome Counts Database (CCDB) - a community resource of plant chromosome numbers.染色体计数数据库(CCDB)——植物染色体数目的社区资源。
New Phytol. 2015 Apr;206(1):19-26. doi: 10.1111/nph.13191. Epub 2014 Nov 26.
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