Pagba Cynthia V, Gupta Amit K, Gorfe Alemayehu A
Department of Integrative Biology and Pharmacology, McGovern Medical School, University of Texas Health Science Center at Houston, 6431 Fannin Street, Houston, Texas 77030, United States.
ACS Omega. 2023 Aug 18;8(34):31419-31426. doi: 10.1021/acsomega.3c04013. eCollection 2023 Aug 29.
Mutations in KRAS account for about 20% of human cancers. Despite the major progress in recent years toward the development of KRAS inhibitors, including the discovery of covalent inhibitors of the G12C KRAS variant for the treatment of non-small-cell lung cancer, much work remains to be done to discover broad-acting inhibitors to treat many other KRAS-driven cancers. In a previous report, we showed that a 308.4 Da small-molecule ligand [(2R)-2-('-(1-indole-3-carbonyl)hydrazino)-2-phenyl-acetamide] binds to KRAS with low micro-molar affinity [; (2):1441-1456]. Binding of this ligand, which we call , to the p1 pocket of KRAS and its interactions with residues at beta-strand 1 and the switch loops have been supported by data from nuclear magnetic resonance spectroscopy and microscale thermophoresis experiments. However, the inhibitory potential of the compound was not demonstrated. Here, we show that inhibits KRAS-mediated signal transduction in cells expressing wild type (WT) and G12D mutant KRAS and reduces levels of guanosine triphosphate-loaded WT KRAS more effectively than G12D KRAS. We ruled out the direct effect on nucleotide exchange or effector binding as possible mechanisms of inhibition using a variety of biophysical assays. Combining these observations with binding data that show comparable affinities of the compound for the active and inactive forms of the mutant but not the WT, we propose conformational selection as a possible mechanism of action of .
KRAS基因突变约占人类癌症的20%。尽管近年来在KRAS抑制剂的开发方面取得了重大进展,包括发现了用于治疗非小细胞肺癌的G12C KRAS变体的共价抑制剂,但要发现能够治疗许多其他由KRAS驱动的癌症的广谱抑制剂,仍有许多工作要做。在之前的一份报告中,我们表明一种308.4 Da的小分子配体[(2R)-2-('-(1-吲哚-3-羰基)肼基)-2-苯基乙酰胺]以低微摩尔亲和力与KRAS结合[;(2):1441-1456]。这种我们称为 的配体与KRAS的p1口袋的结合及其与β链1和开关环处残基的相互作用已得到核磁共振光谱和微量热泳实验数据的支持。然而,该化合物的抑制潜力尚未得到证实。在这里,我们表明 抑制表达野生型(WT)和G12D突变型KRAS的细胞中KRAS介导的信号转导,并且比G12D KRAS更有效地降低鸟苷三磷酸负载的WT KRAS的水平。我们使用各种生物物理测定法排除了对核苷酸交换或效应器结合的直接影响作为可能的抑制机制。将这些观察结果与结合数据相结合,这些数据表明该化合物对突变体的活性和非活性形式具有可比的亲和力,但对WT没有,我们提出构象选择作为 的一种可能作用机制。