University Children's Research, UCR@Kinder-UKE, University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany.
Department of Molecular Pediatrics, Dr. von Hauner Children's Hospital, Ludwig-Maximilians-University, 80337 Munich, Germany.
Int J Mol Sci. 2023 Aug 24;24(17):13158. doi: 10.3390/ijms241713158.
Glutaric acidemia type 1 (GA1) is a neurotoxic metabolic disorder due to glutaryl-CoA dehydrogenase (GCDH) deficiency. The high number of missense variants associated with the disease and their impact on GCDH activity suggest that disturbed protein conformation can affect the biochemical phenotype. We aimed to elucidate the molecular basis of protein loss of function in GA1 by performing a parallel analysis in a large panel of missense variants using different biochemical and biophysical methodologies. Thirteen GCDH variants were investigated in regard to protein stability, hydrophobicity, oligomerization, aggregation, and activity. An altered oligomerization, loss of protein stability and solubility, as well as an augmented susceptibility to aggregation were observed. GA1 variants led to a loss of enzymatic activity, particularly when present at the N-terminal domain. The reduced cellular activity was associated with loss of tetramerization. Our results also suggest a correlation between variant sequence location and cellular protein stability ( < 0.05), with a more pronounced loss of protein observed with variant proximity to the N-terminus. The broad panel of variant-mediated conformational changes of the GCDH protein supports the classification of GA1 as a protein-misfolding disorder. This work supports research toward new therapeutic strategies that target this molecular disease phenotype.
1 型戊二酸血症(GA1)是一种神经毒性代谢紊乱,由戊二酰辅酶 A 脱氢酶(GCDH)缺乏引起。与该疾病相关的大量错义变异及其对 GCDH 活性的影响表明,蛋白质构象的紊乱可能会影响生化表型。我们通过使用不同的生化和生物物理方法,在一个大型错义变异体面板中进行平行分析,旨在阐明 GA1 中蛋白质功能丧失的分子基础。研究了 13 种 GCDH 变异体的蛋白质稳定性、疏水性、寡聚化、聚集和活性。观察到异常的寡聚化、蛋白质稳定性和溶解度丧失,以及聚集的易感性增加。GA1 变体导致酶活性丧失,特别是当存在于 N 端结构域时。细胞活性的降低与四聚体形成的丧失有关。我们的结果还表明,变异序列位置与细胞蛋白稳定性之间存在相关性(<0.05),与变体靠近 N 端时观察到的更明显的蛋白丢失相关。GCDH 蛋白广泛的变异介导的构象变化支持将 GA1 归类为蛋白质错误折叠疾病。这项工作支持针对这种分子疾病表型的新治疗策略的研究。