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通过多个内引物提高环介导等温扩增的灵敏度和速度以更有效地鉴定…… (原文结尾不完整)

Enhancement of loop mediated isothermal amplification's sensitivity and speed by multiple inner primers for more efficient identification of .

作者信息

Lamalee Aekarin, Changsen Chartchai, Jaroenram Wansadaj, Buates Sureemas

机构信息

Department of Microbiology, Faculty of Science, Mahidol University, Bangkok 10400, Thailand.

Bioengineering and Sensing Technology Research Team, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Pathum Thani 12120, Thailand.

出版信息

MethodsX. 2023 Aug 21;11:102328. doi: 10.1016/j.mex.2023.102328. eCollection 2023 Dec.

Abstract

The modified loop-mediated isothermal amplification (LAMP), called multiple hybrid, inner primers (MHP)-LAMP, was developed to enhance the efficiency of the existing LAMP-based assay for detection. The method was built on a conventional LAMP assay by employing 2 newly designed extra sets of primers to increase the initial binding sites of core primers on the 's gene from 8 to 12. With this strategy, the assay detection sensitivity was increased by 10 folds, with the detection limit (DL) approaching 100 copies of purified target genomic DNA (gDNA) as analyzed by real-time turbidity measurement and gel electrophoresis. The MHP also accelerated the rate of DNA amplification by 30%, rendering the assay faster. The MHP-LAMP assay did not cross- react with other pathogens, indicating that it was highly specific for detection. Whilst was used as a study model herein, our idea of using MHP to maximize assay sensitivity and speed is considered as a universal strategy that can be applied to enhance efficiency of LAMP-based assays for detecting any DNA and RNA of interest. •The strategy of using multiple hybrid, inner primers (MHP) to enhance LAMP assay's efficiency was demonstrated with success.•The MHP enhanced the sensitivity and speed of the existing LAMP assay, designed to detect , by 10 times and 30%, respectively.•The proposed strategy can be applied to boost up any other LAMP-based assay's diagnostic performance.

摘要

改良的环介导等温扩增技术(LAMP),即多重杂交内引物(MHP)-LAMP,旨在提高现有基于LAMP的检测方法的效率而开发。该方法基于传统的LAMP检测方法,通过使用两组新设计的额外引物,将核心引物在目标基因上的初始结合位点从8个增加到12个。通过这种策略,检测灵敏度提高了10倍,通过实时浊度测量和凝胶电泳分析,检测限(DL)接近100拷贝的纯化目标基因组DNA(gDNA)。MHP还将DNA扩增速率提高了30%,使检测速度更快。MHP-LAMP检测方法与其他病原体无交叉反应,表明其对目标检测具有高度特异性。虽然本文以目标病原体作为研究模型,但我们使用MHP来最大化检测灵敏度和速度的理念被认为是一种通用策略,可应用于提高基于LAMP的检测方法检测任何感兴趣的DNA和RNA的效率。•使用多重杂交内引物(MHP)提高LAMP检测效率的策略已成功得到验证。•MHP分别将用于检测目标病原体的现有LAMP检测的灵敏度和速度提高了10倍和30%。•所提出的策略可应用于提升任何其他基于LAMP的检测方法的诊断性能。

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