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一些有机水合2,4,6-三氨基嘧啶羧酸盐和硫酸盐中的超分子相互作用。

Supramolecular interactions in some organic hydrated 2,4,6-triaminopyrimidinium carboxylate and sulfate salts.

作者信息

Sangavi Marimuthu, Kumaraguru Narayanasamy, McMillen Colin D, Butcher Ray J

机构信息

Department of Chemistry, Thanthai Periyar Government Arts and Science College (affiliated to Bharathidasan University, Tiruchirappalli 620 024, Tamil Nadu, India), Tiruchirappalli 620 023, Tamil Nadu, India.

Department of Chemistry, Clemson University, H.L. Hunter Laboratories, Clemson, SC 29634, USA.

出版信息

Acta Crystallogr C Struct Chem. 2023 Oct 1;79(Pt 10):435-442. doi: 10.1107/S205322962300829X. Epub 2023 Sep 25.

Abstract

Four salts, namely, 2,4,6-triaminopyrimidinium 6-chloronicotinate dihydrate, CHN·CHClNO·2HO, (I), 2,4,6-triaminopyrimidinediium pyridine-2,6-dicarboxylate dihydrate, CHN·CHNO·2HO, (II), 2,4,6-triaminopyrimidinediium sulfate monohydrate, CHN·SO·HO, (III), and 2,4,6-triaminopyrimidinium 3,5-dinitrobenzoate dihydrate, CHN·CHNO·2HO, (IV), were synthesized and characterized by X-ray diffraction techniques. Proton transfer from the corresponding acid to the pyrimidine base has occurred in all four crystal structures. Of the four salts, two [(I) and (IV)] exist as monoprotonated bases and two [(II) and (III)] exist as diprotonated bases. In all four crystal structures, the acid interacts with the pyrimidine base through N-H...O hydrogen bonds, generating an R(8) ring motif. The sulfate group mimics the role of the carboxylate anions. The water molecules present in compounds (I)-(IV) form water-mediated large ring motifs. The formation of water-mediated interactions in these crystal structures can be used as a model in the study of the hydration of nucleobases. Water molecules play an important role in building supramolecular structures. In addition to these strong hydrogen-bonding interactions, some of the crystal structures are further enriched by aromatic π-π stacking interactions [(I) and (II)].

摘要

合成了四种盐,即二水合2,4,6 - 三氨基嘧啶6 - 氯烟酸酯,CHN·CHClNO·2HO,(I);二水合2,4,6 - 三氨基嘧啶吡啶 - 2,6 - 二羧酸二铵,CHN·CHNO·2HO,(II);一水合2,4,6 - 三氨基嘧啶硫酸二铵,CHN·SO·HO,(III);以及二水合2,4,6 - 三氨基嘧啶3,5 - 二硝基苯甲酸酯,CHN·CHNO·2HO,(IV),并通过X射线衍射技术对其进行了表征。在所有四种晶体结构中均发生了质子从相应酸转移至嘧啶碱的过程。在这四种盐中,两种[(I)和(IV)]以单质子化碱的形式存在,两种[(II)和(III)]以双质子化碱的形式存在。在所有四种晶体结构中,酸通过N - H...O氢键与嘧啶碱相互作用,形成R(8)环 motif。硫酸根模拟了羧酸根阴离子的作用。化合物(I) - (IV)中存在的水分子形成了水介导的大环motif。这些晶体结构中形成的水介导相互作用可作为研究核碱基水合作用的模型。水分子在构建超分子结构中起着重要作用。除了这些强氢键相互作用外,一些晶体结构还通过芳香π - π堆积相互作用[(I)和(II)]进一步得到富集。

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