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细菌果胶甲酯酶 Pme8A 和 PmeC2 来自反刍动物瘤胃的晶体结构。

Crystal Structures of Bacterial Pectin Methylesterases Pme8A and PmeC2 from Rumen .

机构信息

AgResearch Limited, Grasslands Research Centre, Palmerston North 4442, New Zealand.

出版信息

Int J Mol Sci. 2023 Sep 6;24(18):13738. doi: 10.3390/ijms241813738.

Abstract

Pectin is a complex polysaccharide that forms a substantial proportion of the plant's middle lamella of forage ingested by grazing ruminants. Methanol in the rumen is derived mainly from methoxy groups released from pectin by the action of pectin methylesterase (PME) and is subsequently used by rumen methylotrophic methanogens that reduce methanol to produce methane (CH). Members of the genus are key pectin-degrading rumen bacteria that contribute to methanol formation and have important roles in fibre breakdown, protein digestion, and the biohydrogenation of fatty acids. Therefore, methanol release from pectin degradation in the rumen is a potential target for CH mitigation technologies. Here, we present the crystal structures of PMEs belonging to the carbohydrate esterase family 8 (CE8) from and , determined to a resolution of 2.30 Å. These enzymes, like other PMEs, are right-handed β-helical proteins with a well-defined catalytic site and reaction mechanisms previously defined in insect, plant, and other bacterial pectin methylesterases. Potential substrate binding domains are also defined for the enzymes.

摘要

果胶是一种复杂的多糖,构成了反刍动物摄入的饲料植物中层片的很大一部分。瘤胃中的甲醇主要来源于果胶中甲氧基基团在果胶甲酯酶(PME)作用下的释放,随后被瘤胃甲基营养型产甲烷菌利用,将甲醇还原为甲烷(CH)。 是果胶降解瘤胃细菌的关键属,有助于甲醇的形成,并在纤维分解、蛋白质消化和脂肪酸的生物氢化中发挥重要作用。因此,从果胶在瘤胃中的降解中释放甲醇是 CH 减排技术的一个潜在目标。在这里,我们展示了来自 和 的属于碳水化合物酯酶家族 8(CE8)的 PME 的晶体结构,分辨率为 2.30 Å。这些酶与其他 PME 一样,是右手β-螺旋蛋白,具有明确的催化位点和先前在昆虫、植物和其他细菌果胶甲酯酶中定义的反应机制。还为这些酶定义了潜在的底物结合结构域。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b192/10530356/381ab16bccb3/ijms-24-13738-g001.jpg

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