从以色列一头奶牛犊中分离出的多重耐药鼠伤寒沙门氏菌亚种血清型鼠伤寒菌株Bnaya的全基因组序列。
Complete genome sequence of multi-drug-resistant subsp. serovar Typhimurium strain Bnaya isolated from a dairy calf in Israel.
作者信息
Davidovich Chagai, Awwad Aya, Fleker Marcelo, Weisblit Limor, Cytryn Eddie, Blum Shlomo E
机构信息
Water and Environmental Sciences, Institute of Soil, Agricultural Research Organization, Rishon-Lezion, Israel.
Department of Agroecology and Plant Health, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel.
出版信息
Microbiol Resour Announc. 2023 Oct 19;12(10):e0035123. doi: 10.1128/MRA.00351-23. Epub 2023 Oct 3.
Abstract
This manuscript reports the complete genome sequence of a subsp. serovar Typhimurium strain (designated "Bnaya"), isolated from a dead dairy calf with severe diarrhea in Israel. The isolate exhibited multi-drug resistance, which is highly unusual in bovine spp. in Israel, prompting further investigation.
摘要
本手稿报告了一株鼠伤寒沙门氏菌亚种血清型鼠伤寒菌株（命名为“Bnaya”）的全基因组序列，该菌株从以色列一头患有严重腹泻的死亡奶牛犊中分离得到。该分离株表现出多重耐药性，这在以色列的牛种中极不常见，因此需要进一步调查。
相似文献
1
Complete genome sequence of multi-drug-resistant subsp. serovar Typhimurium strain Bnaya isolated from a dairy calf in Israel.
Microbiol Resour Announc. 2023 Oct 19;12(10):e0035123. doi: 10.1128/MRA.00351-23. Epub 2023 Oct 3.
2
Genome sequencing and analysis of subsp. serovar Stanley UPM 517: Insights on its virulence-associated elements and their potentials as vaccine candidates.
PeerJ. 2019 Jun 28;7:e6948. doi: 10.7717/peerj.6948. eCollection 2019.
3
Genomic Approaches for Understanding the Characteristics of subsp. Serovar Typhimurium ST1120, Isolated from Swine Feces in Korea.
J Microbiol Biotechnol. 2017 Nov 28;27(11):1983-1993. doi: 10.4014/jmb.1708.08027.
4
Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5- Strain Isolated from Chicken Breast.
Genome Announc. 2013 Dec 19;1(6):e01068-13. doi: 10.1128/genomeA.01068-13.
5
First Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Typhimurium Strain ATCC 13311 (NCTC 74), a Reference Strain of Multidrug Resistance, as Achieved by Use of PacBio Single-Molecule Real-Time Technology.
Genome Announc. 2014 Oct 2;2(5):e00986-14. doi: 10.1128/genomeA.00986-14.
6
Characterization of integrons and resistance genes in multidrug-resistant Salmonella enterica isolated from meat and dairy products in Egypt.
Int J Food Microbiol. 2014 Oct 17;189:39-44. doi: 10.1016/j.ijfoodmicro.2014.07.031. Epub 2014 Jul 31.
7
Genome analysis and virulence gene expression profile of a multi drug resistant Salmonella enterica serovar Typhimurium ms202.
Gut Pathog. 2022 Jun 28;14(1):28. doi: 10.1186/s13099-022-00498-w.
8
Genetic basis of multidrug resistance in Salmonella enterica serovars Enteritidis and Typhimurium isolated from diarrheic calves in Egypt.
Acta Trop. 2009 Aug;111(2):144-9. doi: 10.1016/j.actatropica.2009.04.004. Epub 2009 Apr 16.
9
Longitudinal study of a clonal, subclinical outbreak of Salmonella enterica subsp. enterica serovar Cerro in a U.S. dairy herd.
Foodborne Pathog Dis. 2007 Winter;4(4):449-61. doi: 10.1089/fpd.2007.0033.
10
Whole-Genome Sequencing of Drug-Resistant Salmonella enterica Isolates from Dairy Cattle and Humans in New York and Washington States Reveals Source and Geographic Associations.
Appl Environ Microbiol. 2017 May 31;83(12). doi: 10.1128/AEM.00140-17. Print 2017 Jun 15.
本文引用的文献
1
MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing.
Nucleic Acids Res. 2023 Jan 6;51(D1):D744-D752. doi: 10.1093/nar/gkac1047.
2
ResFinder 4.0 for predictions of phenotypes from genotypes.
J Antimicrob Chemother. 2020 Dec 1;75(12):3491-3500. doi: 10.1093/jac/dkaa345.
3
SeqSero2: Rapid and Improved Serotype Determination Using Whole-Genome Sequencing Data.
Appl Environ Microbiol. 2019 Nov 14;85(23). doi: 10.1128/AEM.01746-19. Print 2019 Dec 1.
4
Assembly of long, error-prone reads using repeat graphs.
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
5
Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications.
Wellcome Open Res. 2018 Sep 24;3:124. doi: 10.12688/wellcomeopenres.14826.1. eCollection 2018.
6
Salmonella in Dairy Cattle.
Vet Clin North Am Food Anim Pract. 2018 Mar;34(1):133-154. doi: 10.1016/j.cvfa.2017.10.005. Epub 2017 Dec 8.
7
Rapid detection of Salmonella enterica serovar Typhimurium DT104 strains by the polymerase chain reaction.
Acta Vet Scand. 2015 Sep 25;57:59. doi: 10.1186/s13028-015-0143-x.
8
Integrative analysis of Salmonellosis in Israel reveals association of Salmonella enterica Serovar 9,12:l,v:- with extraintestinal infections, dissemination of endemic S. enterica Serovar Typhimurium DT104 biotypes, and severe underreporting of outbreaks.
J Clin Microbiol. 2014 Jun;52(6):2078-88. doi: 10.1128/JCM.00399-14. Epub 2014 Apr 9.
9
Benchmarking of methods for genomic taxonomy.
J Clin Microbiol. 2014 May;52(5):1529-39. doi: 10.1128/JCM.02981-13. Epub 2014 Feb 26.
10
Rapid screening of epidemiologically important Salmonella enterica subsp. enterica serovars by whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry.
Appl Environ Microbiol. 2011 Jun;77(12):4136-46. doi: 10.1128/AEM.02418-10. Epub 2011 Apr 22.
Zotero 插件