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抗体天然多反应性的生化和生物物理特征分析。

Biochemical and biophysical characterization of natural polyreactivity in antibodies.

机构信息

Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL 60637, USA.

Graduate Program in Biophysical Sciences, University of Chicago, Chicago, IL 60637, USA.

出版信息

Cell Rep. 2023 Oct 31;42(10):113190. doi: 10.1016/j.celrep.2023.113190. Epub 2023 Oct 5.

Abstract

To become specialized binders, antibodies undergo a process called affinity maturation to maximize their binding affinity. Despite this process, some antibodies retain low-affinity binding to diverse epitopes in a phenomenon called polyreactivity. Here we seek to understand the molecular basis of this polyreactivity in antibodies. Our results highlight that polyreactive antigen-binding fragments (Fabs) bind their targets with low affinities, comparable to T cell receptor recognition of autologous classical major histocompatibility complex. Extensive mutagenic studies find no singular amino acid residue or biochemical property responsible for polyreactive interaction, suggesting that polyreactive antibodies use multiple strategies for engagement. Finally, our crystal structures and all-atom molecular dynamics simulations of polyreactive Fabs show increased rigidity compared to their monoreactive relatives, forming a neutral and accessible platform for diverse antigens to bind. Together, these data support a cooperative strategy of rigid neutrality in establishing the polyreactive status of an antibody molecule.

摘要

为了成为特异性结合物,抗体需要经历一个称为亲和力成熟的过程,以最大限度地提高其结合亲和力。尽管经过了这个过程,一些抗体仍然保留了与多种表位的低亲和力结合,这种现象称为多反应性。在这里,我们试图了解抗体多反应性的分子基础。我们的研究结果表明,多反应性抗原结合片段(Fab)以低亲和力与靶标结合,与 T 细胞受体识别自身经典主要组织相容性复合物相当。广泛的诱变研究没有发现单一的氨基酸残基或生化特性负责多反应性相互作用,这表明多反应性抗体使用多种策略进行结合。最后,我们对多反应性 Fab 的晶体结构和全原子分子动力学模拟表明,与单反应性 Fab 相比,它们具有更高的刚性,形成了一个中性且易于接近的平台,可供多种抗原结合。总之,这些数据支持了一种在建立抗体分子多反应性状态时的刚性中性的合作策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4645/10858392/17cf6a1d259b/nihms-1941882-f0001.jpg

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