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通过 VHL 招募的 PROTAC 发现高效且选择性的 KRAS 降解剂,用于治疗 KRAS 突变的肿瘤。

Discovery of highly potent and selective KRAS degraders by VHL-recruiting PROTACs for the treatment of tumors with KRAS-Mutation.

机构信息

National Engineering Research Center for Strategic Drugs, Beijing Institute of Pharmacology and Toxicology Institution, Beijing, 100850, China.

National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing, 102206, China.

出版信息

Eur J Med Chem. 2023 Dec 5;261:115857. doi: 10.1016/j.ejmech.2023.115857. Epub 2023 Oct 13.

Abstract

Although several covalent KRAS inhibitors have made great progress in the treatment of KRAS-mutant cancer, their clinical applications are limited by adaptive resistance, motivating novel therapeutic strategies. Through drug design and structure optimization, a series of highly potent and selective KRAS Proteolysis Targeting Chimeras (PROTACs) were developed by incorporating AMG510 and VHL ligand VH032. Among them, degrader YN14 significantly inhibited KRAS-dependent cancer cells growth with nanomolar IC and DC values, and > 95 % maximum degradation (D). Molecular dynamics (MD) simulation showed that YN14 induced a stable KRAS: YN14: VHL ternary complex with low binding free energy (ΔG). Notably, YN14 led to tumor regression with tumor growth inhibition (TGI%) rates more than 100 % in the MIA PaCa-2 xenograft model with well-tolerated dose-schedules. We also found that KRAS degradation exhibited advantages in overcoming adaptive KRAS feedback resistance over KRAS inhibition. Furthermore, combination of RTKs, SHP2, or CDK9 inhibitors with YN14 exhibited synergetic efficacy in KRAS-mutant cancer cells. Overall, these results demonstrated that YN14 holds exciting prospects for the treatment of tumors with KRAS-mutation and boosted efficacy could be achieved for greater clinical applications via drug combination.

摘要

尽管几种共价 KRAS 抑制剂在治疗 KRAS 突变型癌症方面取得了重大进展,但它们的临床应用受到适应性耐药的限制,这促使人们开发新的治疗策略。通过药物设计和结构优化,结合 AMG510 和 VHL 配体 VH032,开发了一系列高活性和选择性的 KRAS 蛋白水解靶向嵌合体(PROTAC)。其中,降解剂 YN14 以纳摩尔 IC 和 DC 值显著抑制 KRAS 依赖性癌细胞生长,最大降解(D)>95%。分子动力学(MD)模拟表明,YN14 诱导 KRAS:YN14:VHL 三元复合物稳定,结合自由能(ΔG)低。值得注意的是,YN14 在 MIA PaCa-2 异种移植模型中以可耐受的剂量方案导致肿瘤消退,肿瘤生长抑制(TGI%)率超过 100%。我们还发现,KRAS 降解在克服适应性 KRAS 反馈耐药方面优于 KRAS 抑制。此外,将 RTKs、SHP2 或 CDK9 抑制剂与 YN14 联合使用,在 KRAS 突变型癌细胞中表现出协同疗效。总的来说,这些结果表明 YN14 为治疗 KRAS 突变肿瘤提供了令人兴奋的前景,通过药物联合可以实现更高的疗效,从而获得更大的临床应用。

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