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利用纳米孔长读测序对橙凤仙花(凤仙花科)进行全基因组组装。

whole genome assembly of the orange jewelweed, Meerb. (Balsaminaceae) using nanopore long-read sequencing.

机构信息

Biomedical Sciences Program, Midwestern University, Glendale, Arizona, United States of America.

College of Veterinary Medicine, Midwestern University, Glendale, Arizona, United States of America.

出版信息

PeerJ. 2023 Oct 23;11:e16328. doi: 10.7717/peerj.16328. eCollection 2023.

Abstract

The plant family Balsaminaceae comprises only two genera, and they are a study in contrasts. While is an impressively prolific genus, with over 1,000 species and more being discovered each year, its sister genus, , has one solitary species, . The two genera also differ in geographic distribution and habitat type ( species are widely distributed in much of the Old World and N. America, while is confined to wetlands specific to S. India, Sri Lanka, and SE Asia). Other contrasting features include plant habit, habitat, floral architecture, mode of seed dispersal, and a host of other traits. The family Balsaminaceae is therefore an excellent model for studying speciation and character evolution as well as understanding the proximal and evolutionary forces that have driven the two genera to adopt such contrasting evolutionary paths. Various species of the genus are also commercially important in the ornamental flower industry and as sources of phytochemicals that are of medicinal and other commercial value. As a preliminary step towards studying the genomic basis of the contrasting features of the two genera, we have sequenced and assembled, , the genome of an iconic species from N. America, namely , and report our findings here.

摘要

秋海棠科植物仅包含两个属,它们是截然不同的研究对象。虽然秋海棠属是一个令人印象深刻的多产属,拥有超过 1000 个物种,并且每年都有更多的物种被发现,但它的姊妹属单种属,仅有一个物种。这两个属在地理分布和生境类型上也存在差异(秋海棠属物种广泛分布于旧大陆和北美大部分地区,而单种属则局限于印度南部、斯里兰卡和东南亚特有的湿地)。其他的对比特征包括植物习性、栖息地、花的结构、种子传播模式以及许多其他特征。因此,秋海棠科是研究物种形成和特征进化以及理解导致两个属采用如此截然不同的进化途径的近端和进化力量的绝佳模型。该属的各种物种在观赏花卉产业和药用及其他商业价值的植物化学物质来源方面也具有商业重要性。作为研究两个属对比特征的基因组基础的初步步骤,我们已经对来自北美的一个标志性秋海棠属物种,即,进行了测序和组装,并在此报告我们的发现。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/46fd/10601903/626aeabb83b8/peerj-11-16328-g001.jpg

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