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扩展P3D在小分子结构测定中的适用性。

Extending the applicability of P3D for structure determination of small molecules.

作者信息

Ibáñez de Opakua Alain, Zweckstetter Markus

机构信息

German Center for Neurodegenerative Diseases (DZNE), Von-Siebold-Str. 3a, 37075 Göttingen, Germany.

Department for NMR-based Structural Biology, Max Planck Institute for Biophysical Chemistry, Am Faßberg 11, 37077 Göttingen, Germany.

出版信息

Magn Reson (Gott). 2021 Apr 8;2(1):105-116. doi: 10.5194/mr-2-105-2021. eCollection 2021.

Abstract

The application of anisotropic nuclear magnetic resonance (NMR) parameters for the correct structural assignment of small molecules requires the use of partially ordered media. Previously we demonstrated that the use of P3D simulations using poly(-benzyl-L-glutamate) (PBLG) as an alignment medium allows for the determination of the correct diastereomer from extremely sparse NMR data. Through the analysis of the structural characteristics of small molecules in different alignment media, here we show that when steric or electrostatic factors dominate the alignment, P3D-PBLG retains its diastereomer discrimination power. We also demonstrate that P3D simulations can define the different conformations of a flexible small molecule from sparse NMR data.

摘要

将各向异性核磁共振(NMR)参数应用于小分子的正确结构归属需要使用部分有序介质。此前我们证明,使用聚(-苄基-L-谷氨酸)(PBLG)作为取向介质进行P3D模拟,能够从极其稀疏的NMR数据中确定正确的非对映异构体。通过分析小分子在不同取向介质中的结构特征,我们在此表明,当空间或静电因素主导取向时,P3D-PBLG保留其非对映异构体鉴别能力。我们还证明,P3D模拟可以从稀疏的NMR数据中定义柔性小分子的不同构象。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aed/10539764/841c16669139/mr-2-105-f01.jpg

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