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利用形态学和基因组靶向测序鉴定津巴布韦本地种植的香蕉(芭蕉属)品种

Identification of Zimbabwe's locally grown banana (Musa Spp.) cultivars using morphology and genome-targeted sequencing.

作者信息

Beaton Kumbirai, Mazadza Allen, Chikwambi Zedias

机构信息

Department of Biotechnology, Chinhoyi University of Technology, P.Bag 7724, Chinhoyi, Zimbabwe.

出版信息

J Genet Eng Biotechnol. 2023 Nov 14;21(1):118. doi: 10.1186/s43141-023-00562-1.

Abstract

BACKGROUND

Banana production is increasingly under threat due to harsh weather conditions as a result of climate change and different diseases. As such there is a need for the preservation and the characterization of the banana cultivar population for the purposes of crop improvement. The identification of collected banana germplasm in Zimbabwe was conducted based on the Inter-transcribed spacer region as well as morphology. The study was conducted with the aim of distinguishing one cultivar from another towards genetic conservation as well as banana improvement.

RESULTS

ITS 1 and ITS 4 region targeting primers were used to amplify the DNA from twelve cultivars as well as sequence. Blast results identified five Musa groups which are Musa balbisiana (BB), Musa ABB, Musa AB hybrid, Musa acuminata (AAA), and Musa acuminata subsp. Malaccensis (AA). Phylogenetic analysis was done on the sequences under study and a maximum likelihood tree was generated to determine relationships between the sequences. Further identification was done using the inflorescence, bract, and male bud and fruit characteristics of each cultivar complementing the molecular evaluation.

CONCLUSION

Genetic and morphological identification of locally grown bananas was therefore successful. An important step towards identifying pure lines suitable for breeding.

摘要

背景

由于气候变化导致的恶劣天气条件以及各种病害,香蕉生产正日益受到威胁。因此,为了作物改良,有必要对香蕉品种群体进行保存和特征描述。基于转录间隔区以及形态学对津巴布韦收集的香蕉种质进行了鉴定。该研究旨在区分不同品种,以实现遗传保护以及香蕉改良。

结果

使用靶向ITS 1和ITS 4区域的引物对12个品种的DNA进行扩增并测序。Blast结果鉴定出5个芭蕉属组,即野蕉(BB)、ABB蕉、AB杂交蕉、小果野蕉(AAA)和马六甲小果野蕉亚种(AA)。对所研究的序列进行了系统发育分析,并生成了最大似然树以确定序列之间的关系。利用每个品种的花序、苞片、雄花蕾和果实特征进行进一步鉴定,以补充分子评估。

结论

因此,对当地种植香蕉的遗传和形态鉴定是成功的。这是鉴定适合育种的纯系的重要一步。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c6cf/10646137/d99bc2623c25/43141_2023_562_Fig1_HTML.jpg

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