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使用机器学习算法在甲状腺功能减退犬中开发诊断预测模型并进行内部验证。

Development and internal validation of diagnostic prediction models using machine-learning algorithms in dogs with hypothyroidism.

作者信息

Corsini Andrea, Lunetta Francesco, Alboni Fabrizio, Drudi Ignazio, Faroni Eugenio, Fracassi Federico

机构信息

Department of Veterinary Medical Sciences, Alma Mater Studiorum-University of Bologna, Ozzano Emilia, Italy.

Department of Veterinary Sciences, University of Parma, Parma, Italy.

出版信息

Front Vet Sci. 2023 Dec 19;10:1292988. doi: 10.3389/fvets.2023.1292988. eCollection 2023.

Abstract

INTRODUCTION

Hypothyroidism can be easily misdiagnosed in dogs, and prediction models can support clinical decision-making, avoiding unnecessary testing and treatment. The aim of this study is to develop and internally validate diagnostic prediction models for hypothyroidism in dogs by applying machine-learning algorithms.

METHODS

A single-institutional cross-sectional study was designed searching the electronic database of a Veterinary Teaching Hospital for dogs tested for hypothyroidism. Hypothyroidism was diagnosed based on suggestive clinical signs and thyroid function tests. Dogs were excluded if medical records were incomplete or a definitive diagnosis was lacking. Predictors identified after data processing were dermatological signs, alopecia, lethargy, hematocrit, serum concentrations of cholesterol, creatinine, total thyroxine (tT4), and thyrotropin (cTSH). Four models were created by combining clinical signs and clinicopathological variables expressed as quantitative (models 1 and 2) and qualitative variables (models 3 and 4). Models 2 and 4 included tT4 and cTSH, models 1 and 3 did not. Six different algorithms were applied to each model. Internal validation was performed using a 10-fold cross-validation. Apparent performance was evaluated by calculating the area under the receiver operating characteristic curve (AUROC).

RESULTS

Eighty-two hypothyroid and 233 euthyroid client-owned dogs were included. The best performing algorithms were naive Bayes in model 1 (AUROC = 0.85; 95% confidence interval [CI] = 0.83-0.86) and in model 2 (AUROC = 0.98; 95% CI = 0.97-0.99), logistic regression in model 3 (AUROC = 0.88; 95% CI = 0.86-0.89), and random forest in model 4 (AUROC = 0.99; 95% CI = 0.98-0.99). Positive predictive value was 0.76, 0.84, 0.93, and 0.97 in model 1, 2, 3, and 4, respectively. Negative predictive value was 0.89, 0.89, 0.99, and 0.99 in model 1, 2, 3, and 4, respectively.

DISCUSSION

Machine learning-based prediction models were accurate in predicting and quantifying the likelihood of hypothyroidism in dogs based on internal validation performed in a single-institution, but external validation is required to support the clinical applicability of these models.

摘要

引言

甲状腺功能减退症在犬类中很容易被误诊,而预测模型可以辅助临床决策,避免不必要的检测和治疗。本研究的目的是通过应用机器学习算法,开发并在内部验证犬类甲状腺功能减退症的诊断预测模型。

方法

设计了一项单机构横断面研究,在一家兽医教学医院的电子数据库中搜索接受过甲状腺功能减退症检测的犬只。根据提示性临床症状和甲状腺功能测试诊断甲状腺功能减退症。如果病历不完整或缺乏明确诊断,则将犬只排除。数据处理后确定的预测因素包括皮肤症状、脱毛、嗜睡、血细胞比容、胆固醇、肌酐、总甲状腺素(tT4)和促甲状腺激素(cTSH)的血清浓度。通过将临床症状和以定量(模型1和2)及定性变量(模型3和4)表示的临床病理变量相结合,创建了四个模型。模型2和4包括tT4和cTSH,模型1和3不包括。对每个模型应用六种不同的算法。使用10倍交叉验证进行内部验证。通过计算受试者工作特征曲线下面积(AUROC)评估表观性能。

结果

纳入了82只甲状腺功能减退的客户拥有犬和233只甲状腺功能正常的犬。表现最佳的算法在模型1中是朴素贝叶斯(AUROC = 0.85;95%置信区间[CI] = 0.83 - 0.86)和模型2中(AUROC = 0.98;95% CI = 0.97 - 0.99),模型3中是逻辑回归(AUROC = 0.88;95% CI = 0.86 - 0.89),模型4中是随机森林(AUROC = 0.99;95% CI = 0.98 - 0.99)。模型1、2、3和4的阳性预测值分别为0.76、0.84、0.93和0.97。模型1、2、3和4的阴性预测值分别为0.89、0.89、0.99和0.99。

讨论

基于机器学习的预测模型在单机构进行的内部验证中,能够准确预测并量化犬类甲状腺功能减退症的可能性,但需要外部验证来支持这些模型的临床适用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7822/10758480/f726896d9204/fvets-10-1292988-g001.jpg

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