Draft genome sequence of the basidiomycetous yeast JCM 32575 isolated from Ellesmere Island, Canadian High Arctic.
作者信息
Fujikawa Tatsuya, Ishihara Jun-Ichi, Vincent Warwick F, Uchida Masaki, Tsuji Masaharu
机构信息
Department of Materials Chemistry, National Institute of Technology (KOSEN), Asahikawa College, Asahikawa, Hokkaido, Japan.
Medical Mycology Research Center, Chiba University, Chiba, Japan.
出版信息
Microbiol Resour Announc. 2024 Feb 15;13(2):e0082023. doi: 10.1128/mra.00820-23. Epub 2024 Jan 5.
Abstract
JCM 32575 was isolated from glacial sediments on Ellesmere Island in the Canadian High Arctic and described as a new basidiomycetous yeast. This species does not require amino acids and vitamins for growth and can grow at sub-zero temperatures. Here, we report a draft genome sequence of this strain.
摘要
相似文献
1
Draft genome sequence of the basidiomycetous yeast JCM 32575 isolated from Ellesmere Island, Canadian High Arctic.
Microbiol Resour Announc. 2024 Feb 15;13(2):e0082023. doi: 10.1128/mra.00820-23. Epub 2024 Jan 5.
2
Mrakia hoshinonis sp. nov., a novel psychrophilic yeast isolated from a retreating glacier on Ellesmere Island in the Canadian High Arctic.
Int J Syst Evol Microbiol. 2019 Apr;69(4):944-948. doi: 10.1099/ijsem.0.003216. Epub 2019 Jan 3.
3
Vishniacozyma ellesmerensis sp. nov., a psychrophilic yeast isolated from a retreating glacier in the Canadian High Arctic.
Int J Syst Evol Microbiol. 2019 Mar;69(3):696-700. doi: 10.1099/ijsem.0.003206. Epub 2019 Jan 3.
4
High-Quality Genome Sequence of Cystobasidium tubakii JCM 31526, Isolated from East Ongul Island, Antarctica.
Microbiol Resour Announc. 2022 Oct 20;11(10):e0074122. doi: 10.1128/mra.00741-22. Epub 2022 Sep 15.
5
Draft Genome Sequence of Cryophilic Basidiomycetous Yeast Mrakia blollopis SK-4, Isolated from an Algal Mat of Naga-ike Lake in the Skarvsnes Ice-Free Area, East Antarctica.
Genome Announc. 2015 Jan 22;3(1):e01454-14. doi: 10.1128/genomeA.01454-14.
6
sp. nov. and sp. nov., two novel basidiomycetous yeast species isolated from cold environments.
Int J Syst Evol Microbiol. 2020 Aug;70(8):4704-4713. doi: 10.1099/ijsem.0.004336. Epub 2020 Jul 22.
7
Cold-stress responses in the Antarctic basidiomycetous yeast Mrakia blollopis.
R Soc Open Sci. 2016 Jul 6;3(7):160106. doi: 10.1098/rsos.160106. eCollection 2016 Jul.
8
Genome Sequence of Basidiomycetous Yeast Mrakia gelida MGH-2, Isolated from Skarvsnes Ice-Free Area, East Antarctica.
Microbiol Resour Announc. 2023 Jan 24;12(1):e0106422. doi: 10.1128/mra.01064-22. Epub 2022 Dec 14.
9
sp. nov. and sp. nov., Two Novel Basidiomycetous Yeast Species Isolated from Soil in Korea.
Mycobiology. 2021 Nov 3;49(5):469-475. doi: 10.1080/12298093.2021.1986927. eCollection 2021.
10
Mrakiella cryoconiti gen. nov., sp. nov., a psychrophilic, anamorphic, basidiomycetous yeast from alpine and arctic habitats.
Int J Syst Evol Microbiol. 2008 Dec;58(Pt 12):2977-82. doi: 10.1099/ijs.0.2008/000836-0.
本文引用的文献
1
Genome Sequence of Basidiomycetous Yeast Mrakia gelida MGH-2, Isolated from Skarvsnes Ice-Free Area, East Antarctica.
Microbiol Resour Announc. 2023 Jan 24;12(1):e0106422. doi: 10.1128/mra.01064-22. Epub 2022 Dec 14.
2
High-Quality Genome Sequence of Cystobasidium tubakii JCM 31526, Isolated from East Ongul Island, Antarctica.
Microbiol Resour Announc. 2022 Oct 20;11(10):e0074122. doi: 10.1128/mra.00741-22. Epub 2022 Sep 15.
3
Draft Genome Sequences of Five Cystobasidium ongulense Strains Isolated from Areas near Syowa Station, East Antarctica.
Microbiol Resour Announc. 2022 Jul 21;11(7):e0022422. doi: 10.1128/mra.00224-22. Epub 2022 Jun 13.
4
Witnessing ice habitat collapse in the Arctic.
Science. 2020 Nov 27;370(6520):1031-1032. doi: 10.1126/science.abe4491.
5
RepeatModeler2 for automated genomic discovery of transposable element families.
Proc Natl Acad Sci U S A. 2020 Apr 28;117(17):9451-9457. doi: 10.1073/pnas.1921046117. Epub 2020 Apr 16.
6
Mrakia hoshinonis sp. nov., a novel psychrophilic yeast isolated from a retreating glacier on Ellesmere Island in the Canadian High Arctic.
Int J Syst Evol Microbiol. 2019 Apr;69(4):944-948. doi: 10.1099/ijsem.0.003216. Epub 2019 Jan 3.
7
fastp: an ultra-fast all-in-one FASTQ preprocessor.
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
8
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Bioinformatics. 2015 Oct 1;31(19):3210-2. doi: 10.1093/bioinformatics/btv351. Epub 2015 Jun 9.
9
Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads.
Genome Res. 2014 Aug;24(8):1384-95. doi: 10.1101/gr.170720.113. Epub 2014 Apr 22.
Zotero 插件