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揭示截断重组 SA01-OmpA 蛋白的结构-乳化功能关系为生物乳化剂开辟了新的前景。

Unveiling the structure-emulsifying function relationship of truncated recombinant forms of the SA01-OmpA protein opens up a new vista in bioemulsifiers.

机构信息

Department of Energy and Environmental Biotechnology, National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran, Iran.

Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.

出版信息

Microbiol Spectr. 2024 Feb 6;12(2):e0346523. doi: 10.1128/spectrum.03465-23. Epub 2024 Jan 11.

Abstract

The emulsifying ability of SA01-OmpA (outer membrane protein A from sp. SA01) was found to be constrained by challenges like low production efficiency and high costs associated with protein recovery from inclusion bodies, as described in our previous study. The present study sought to benefit from the advantages of the targeted truncating of SA01-OmpA protein, taking into account the reduced propensity of protein expression as inclusion bodies and cytotoxicity. Here, the structure and activity relationship of two truncated recombinant forms of SA01-OmpA protein was unraveled through a hybrid approach based on experimental data and computational methodologies, representing an innovative bioemulsifier with advantageous emulsifying activity. The recombinant truncated SA01-OmpA variants were cloned and heterologously expressed in host cells and subsequently purified. The results showed increased emulsifying activity of N-terminally truncated SA01-OmpA (NT-OmpA) compared to full-length SA01-OmpA. Molecular dynamics (MD) simulations analysis demonstrated a direct correlation between the C-terminally truncated SA01-OmpA (CT-OmpA) and its expression as inclusion bodies. Analysis of the structure-activity relationship of truncated variants of SA01-OmpA revealed that, compared to the full-length protein, deletion of the β-barrel portion from the N-terminal of SA01-OmpA increased the emulsifying activity of NT-OmpA while lowering its expression as inclusion bodies. Contrary to the full-length protein, the N-terminally truncated SA01-OmpA was not as cytotoxic, according to the MTT assay, FCM analysis, and AO/EB staining. The findings of this extensive study advance our knowledge of SA01-OmpA at the molecular level as well as the design and development of efficient bioemulsifiers.IMPORTANCEPrevious research (Shahryari et al. 2021, mSystems 6: e01175-20) introduced and characterized the SA01-OmpA protein as a multifaceted protein with a variety of functions, including maintaining cellular homeostasis under oxidative stress conditions, biofilm formation, outer membrane vesicles (OMV) biogenesis, and beneficial emulsifying capacity. By truncating the SA01-OmpA protein, the current study presents a unique method for developing protein-type bioemulsifiers. The findings indicate that the N-terminally truncated SA01-OmpA (NT-OmpA) has the potential to fully replace full-length SA01-OmpA as a novel bioemulsifier with significant emulsifying activity. This study opens up a new frontier in bioemulsifiers, shedding light on a possible relationship between the structure and activity of SA01-OmpA truncated forms.

摘要

SA01-OmpA(来自 sp. SA01 的外膜蛋白 A)的乳化能力受到一些挑战的限制,例如低生产效率和从包涵体中回收蛋白质的高成本,这在我们之前的研究中已经描述过。本研究旨在利用靶向截断 SA01-OmpA 蛋白的优势,考虑到蛋白表达为包涵体和细胞毒性的降低趋势。在这里,通过基于实验数据和计算方法的混合方法,揭示了两种截断的 SA01-OmpA 蛋白重组形式的结构-活性关系,这是一种具有优势乳化活性的新型生物乳化剂。将重组截断的 SA01-OmpA 变体克隆并在 宿主细胞中异源表达,然后进行纯化。结果表明,与全长 SA01-OmpA 相比,N 端截断的 SA01-OmpA(NT-OmpA)具有更高的乳化活性。分子动力学(MD)模拟分析表明,C 端截断的 SA01-OmpA(CT-OmpA)与其作为包涵体的表达之间存在直接相关性。对 SA01-OmpA 截断变体的结构-活性关系的分析表明,与全长蛋白相比,从 SA01-OmpA 的 N 端删除β桶部分增加了 NT-OmpA 的乳化活性,同时降低了其作为包涵体的表达。与全长蛋白相反,根据 MTT 测定、FCM 分析和 AO/EB 染色,N 端截断的 SA01-OmpA 的细胞毒性并不高。这项广泛研究的结果在分子水平上提高了我们对 SA01-OmpA 的认识,同时也为高效生物乳化剂的设计和开发提供了依据。

重要性

之前的研究(Shahryari 等人,2021 年,mSystems 6:e01175-20)介绍并表征了 SA01-OmpA 蛋白作为一种多功能蛋白,具有多种功能,包括在氧化应激条件下维持细胞内稳态、生物膜形成、外膜囊泡(OMV)生物发生以及有益的乳化能力。通过截断 SA01-OmpA 蛋白,本研究提出了一种开发蛋白型生物乳化剂的独特方法。研究结果表明,N 端截断的 SA01-OmpA(NT-OmpA)有可能完全替代全长 SA01-OmpA,成为一种具有显著乳化活性的新型生物乳化剂。这项研究为生物乳化剂开辟了一个新的前沿领域,揭示了 SA01-OmpA 截断形式的结构与活性之间可能存在的关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8ca9/10846152/856de7adfc1f/spectrum.03465-23.f001.jpg

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