Department of Entomology, Cornell University, Ithaca, NY, 14853, USA.
BTSB-UR 7417, Université Fédérale de Toulouse, Institut National Universitaire Jean-François Champollion, Place de Verdun, 81000, Albi, France.
BMC Genomics. 2024 Jan 20;25(1):84. doi: 10.1186/s12864-024-10012-y.
Venoms have evolved independently over a hundred times in the animal kingdom to deter predators and/or subdue prey. Venoms are cocktails of various secreted toxins, whose origin and diversification provide an appealing system for evolutionary researchers. Previous studies of the ant venom of Tetramorium bicarinatum revealed several Myrmicitoxin (MYRTX) peptides that gathered into seven precursor families suggesting different evolutionary origins. Analysis of the T. bicarinatum genome enabling further genomic approaches was necessary to understand the processes underlying the evolution of these myrmicitoxins.
Here, we sequenced the genome of Tetramorium bicarinatum and reported the organisation of 44 venom peptide genes (vpg). Of the eleven chromosomes that make up the genome of T. bicarinatum, four carry the vpg which are organized in tandem repeats. This organisation together with the ML evolutionary analysis of vpg sequences, is consistent with evolution by local duplication of ancestral genes for each precursor family. The structure of the vpg into two or three exons is conserved after duplication events while the promoter regions are the least conserved parts of the vpg even for genes with highly identical sequences. This suggests that enhancer sequences were not involved in duplication events, but were recruited from surrounding regions. Expression level analysis revealed that most vpg are highly expressed in venom glands, although one gene or group of genes is much more highly expressed in each family. Finally, the examination of the genomic data revealed that several genes encoding transcription factors (TFs) are highly expressed in the venom glands. The search for binding sites (BS) of these TFs in the vpg promoters revealed hot spots of GATA sites in several vpg families.
In this pioneering investigation on ant venom genes, we provide a high-quality assembly genome and the annotation of venom peptide genes that we think can fosters further genomic research to understand the evolutionary history of ant venom biochemistry.
毒液在动物王国中独立进化了一百多次,以阻止捕食者和/或制服猎物。毒液是各种分泌毒素的混合物,其起源和多样化为进化研究人员提供了一个有吸引力的系统。以前对 Tetramorium bicarinatum 蚂蚁毒液的研究揭示了几种 Myrmicitoxin(MYRTX)肽,这些肽聚集在七个前体家族中,表明它们有不同的进化起源。分析 Tetramorium bicarinatum 的基因组,以进一步进行基因组研究,对于理解这些 myrmicitoxins 进化背后的过程是必要的。
在这里,我们对 Tetramorium bicarinatum 的基因组进行了测序,并报告了 44 种毒液肽基因(vpg)的组织。在构成 T. bicarinatum 基因组的十一条染色体中,有四条携带 vpg,它们串联重复排列。这种组织方式以及 vpg 序列的 ML 进化分析,与每个前体家族的祖先基因的局部复制进化一致。在重复事件之后,vpg 结构被分成两个或三个外显子是保守的,而启动子区域是 vpg 中最不保守的部分,即使对于具有高度相同序列的基因也是如此。这表明增强子序列没有参与重复事件,而是从周围区域招募而来。表达水平分析显示,大多数 vpg 在毒液腺中高度表达,尽管一个基因或一组基因在每个家族中表达水平更高。最后,检查基因组数据发现,编码转录因子(TF)的几个基因在毒液腺中高度表达。在 vpg 启动子中搜索这些 TF 的结合位点(BS),发现几个 vpg 家族中有 GATA 位点的热点。
在这项开创性的蚂蚁毒液基因研究中,我们提供了高质量的组装基因组和毒液肽基因的注释,我们认为这可以促进进一步的基因组研究,以了解蚂蚁毒液生物化学的进化历史。