Department of PG Studies in Biotechnology, Nrupathunga University, Bangalore, Karnataka, India.
Department of Biotechnology, Siddaganga Institute of Technology, Tumkur, India.
PLoS One. 2024 Jan 24;19(1):e0296010. doi: 10.1371/journal.pone.0296010. eCollection 2024.
The present study explores the epidermal growth factor receptor (EGFR) tyrosine kinase inhibition efficacy of secondary metabolites in Trichoderma spp. through molecular docking, molecular dynamics (MD) simulation and MM-PBSA approach. The result of molecular docking confirmed that out of 200 metabolites screened, three metabolites such as Harzianelactone A, Pretrichodermamide G and Aspochalasin M, potentially bound with the active binding site of EGFR tyrosine kinase domain(PDB ID: 1M17) with a threshold docking score of ≤- 9.0 kcal/mol when compared with the standard EGFR inhibitor (Erlotinib). The MD simulation was run to investigate the potential for stable complex formation in EGFR tyrosine kinase domain-unbound/lead metabolite (Aspochalasin M)-bound/standard inhibitor (Erlotinib)-bound complex. The MD simulation analysis at 100 ns revealed that Aspochalasin M formed the stable complex with EGFR. Besides, the in silico predication of pharmacokinetic properties further confirmed that Aspochalasin M qualified the drug-likeness rules with no harmful side effects (viz., hERG toxicity, hepatotoxicity and skin sensitization), non-mutagenicity and favourable logBB value. Moreover, the BOILED-Egg model predicted that Aspochalasin M showed a higher gastrointestinal absorption with improved bioavailability when administered orally and removed from the central nervous system (CNS). The results of the computational studies concluded that Aspochalasin M possessed significant efficacy in binding EGFR's active sites compared to the known standard inhibitor (Erlotinib). Therefore, Aspochalasin M can be used as a possible anticancer drug candidate and further in vitro and in vivo experimental validation of Aspochalasin M of Trichoderma spp. are required to determine its anticancer potential.
本研究通过分子对接、分子动力学(MD)模拟和 MM-PBSA 方法,探讨了 Trichoderma spp. 中次生代谢物对表皮生长因子受体(EGFR)酪氨酸激酶的抑制作用。分子对接的结果证实,在所筛选的 200 种代谢产物中,有 3 种代谢产物(如哈茨木霉内酯 A、前曲霉菌胺 G 和 Asperchalasin M)与 EGFR 酪氨酸激酶结构域的活性结合位点(PDB ID:1M17)结合,其阈值对接评分≤-9.0 kcal/mol,与标准 EGFR 抑制剂(厄洛替尼)相比。进行 MD 模拟以研究 EGFR 酪氨酸激酶结构域未结合/先导代谢物(Asperchalasin M)结合/标准抑制剂(厄洛替尼)结合复合物中稳定复合物形成的潜力。在 100 ns 的 MD 模拟分析中,Asperchalasin M 与 EGFR 形成稳定的复合物。此外,基于计算机的药代动力学性质预测进一步证实,Asperchalasin M 符合药物相似性规则,没有有害的副作用(即 hERG 毒性、肝毒性和皮肤致敏性)、非致突变性和良好的 logBB 值。此外,BOILED-Egg 模型预测,当口服给予时,Asperchalasin M 显示出更高的胃肠道吸收和改善的生物利用度,并从中枢神经系统(CNS)中去除。计算研究的结果表明,与已知的标准抑制剂(厄洛替尼)相比,Asperchalasin M 在结合 EGFR 的活性部位方面具有显著的功效。因此,Asperchalasin M 可以用作潜在的抗癌药物候选物,并需要进一步进行 Trichoderma spp. 的 Asperchalasin M 的体外和体内实验验证,以确定其抗癌潜力。