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对家族 GH119 的生化研究揭示了其具有单一的α-淀粉酶特异性,并证实了与 GH57 酶共享催化机制。

Biochemical exploration of family GH119 reveals a single α-amylase specificity and confirms shared catalytic machinery with GH57 enzymes.

机构信息

Department of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, Kongens Lyngby 2800, Denmark.

Department of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, Kongens Lyngby 2800, Denmark; Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah 21589, Saudi Arabia.

出版信息

Int J Biol Macromol. 2024 Mar;262(Pt 2):129783. doi: 10.1016/j.ijbiomac.2024.129783. Epub 2024 Jan 26.

DOI:10.1016/j.ijbiomac.2024.129783
PMID:38280706
Abstract

While hundreds of starch- and glycogen-degrading enzymes have been characterized experimentally in historical families such as GH13, GH14, GH15, GH57 and GH126 of the CAZy database (www.cazy.org), the α-amylase from Bacillus circulans is the only enzyme that has been characterized in family GH119. Since glycosidase families have been shown to often group enzymes with different substrates or products, a single characterized enzyme in a family is insufficient to extrapolate enzyme function based solely on sequence similarity. Here we report the rational exploration of family GH119 through the biochemical characterization of five GH119 members. All enzymes shared single α-amylase specificity but display distinct product profile. We also report the first kinetic constants in family GH119 and the first experimental validation of previously predicted catalytic residues in family GH119, confirming that families GH119 and GH57 can be grouped in the novel clan GH-T of the CAZy database.

摘要

虽然 CAZy 数据库(www.cazy.org)中已经在历史悠久的家族(如 GH13、GH14、GH15、GH57 和 GH126)中对数百种淀粉和糖原降解酶进行了实验表征,但仅有来源于环状芽孢杆菌的α-淀粉酶在 GH119 家族中进行了表征。由于糖苷酶家族通常将具有不同底物或产物的酶聚集在一起,因此仅对家族中的单个特征酶进行研究,不足以仅根据序列相似性推断酶的功能。在这里,我们通过对五个 GH119 成员的生化特性进行研究,对 GH119 家族进行了合理的探索。所有酶均具有单一的α-淀粉酶特异性,但表现出不同的产物谱。我们还报道了 GH119 家族的第一个动力学常数,并首次对 GH119 家族中先前预测的催化残基进行了实验验证,证实了 GH119 家族和 GH57 家族可以归入 CAZy 数据库中新型 GH-T 家族。

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