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19年国际高分辨率HLA分型外部能力验证评估

Evaluation of 19 years of international external proficiency testing for high-resolution HLA typing.

作者信息

Voorter C E M, Groeneveld L, Heidt S, Wieten L

机构信息

Department of Transplantation Immunology, Tissue Typing Laboratory, Maastricht University Medical Center, Maastricht, Netherlands.

Department of Immunology, Leiden University Medical Center, Leiden, Netherlands.

出版信息

Front Genet. 2024 Jan 29;14:1290915. doi: 10.3389/fgene.2023.1290915. eCollection 2023.

Abstract

The international high-resolution external proficiency testing (EPT) started in 2004 with high-resolution typing of human leucocyte antigen (HLA) class I (HLA-A,B,C) and HLA class II (HLA-DRB1, DRB345, DQB1, and DPB1) alleles, since possibilities for such an EPT within Europe were limited and all existing EPTs at that time made use of the comparison of HLA typing results without a reference. This EPT was set up as a collaboration between the HLA laboratory of Leiden, providing DNA samples to the participants, and the laboratory of Maastricht, performing the high-resolution typing as the reference result and evaluating the results of all participants according to the prevailing European Federation for Immunogenetics (EFI) standards. Once a year, 12 samples were sent to the participating laboratories, and evaluation and certificates were provided at the end of that same year. During the years, the EPT was extended to low-resolution HLA class I and II typing, high-resolution typing including DQA1 and DPA1, and allelic resolution typing for HLA class I, the latter one being unique in this field. Evaluation of the high-resolution typing results of the last 19 years showed a clear increase in the number of loci tested by the participating laboratories and a clear change of method from Sanger sequencing with additional other techniques (SSO/SSP) to the nowadays widely used next-generation sequencing method. By strictly using the EFI rules for high-resolution HLA typing, the participants were made aware of the ambiguities within exons 2 and 3 for class I and exon 2 for class II and the presence of null alleles even in a two-field HLA typing. There was an impressive learning curve, resulting in >98% correctly typed samples since 2017 and a 100% fulfillment of EFI rules for all laboratories for all loci submitted in the last 2 years. Overall, this EPT meets the need of an EPT for high-resolution typing for EFI accreditation.

摘要

国际高分辨率外部能力验证(EPT)始于2004年,对人类白细胞抗原(HLA)I类(HLA - A、B、C)和II类(HLA - DRB1、DRB345、DQB1和DPB1)等位基因进行高分辨率分型,因为当时在欧洲进行这种EPT的可能性有限,且当时所有现有的EPT都采用HLA分型结果比较而无参考标准。该EPT是莱顿的HLA实验室与马斯特里赫特的实验室合作设立的,莱顿实验室向参与者提供DNA样本,马斯特里赫特实验室进行高分辨率分型作为参考结果,并根据当时盛行的欧洲免疫遗传学联合会(EFI)标准评估所有参与者的结果。每年向参与实验室发送12个样本,并在同年年底提供评估和证书。多年来,EPT扩展到低分辨率HLA I类和II类分型、包括DQA1和DPA1的高分辨率分型以及HLA I类的等位基因分辨率分型,后者在该领域独具特色。对过去19年高分辨率分型结果的评估表明,参与实验室检测的基因座数量明显增加,方法也从使用桑格测序及其他技术(SSO/SSP)明显转变为如今广泛使用的下一代测序方法。通过严格遵循EFI高分辨率HLA分型规则,参与者了解到I类外显子2和3以及II类外显子2中的模糊性,甚至在双字段HLA分型中也存在无效等位基因。出现了令人印象深刻的学习曲线,自2017年以来正确分型样本率超过98%,在过去两年中所有实验室提交的所有基因座均100%符合EFI规则。总体而言,该EPT满足了EFI认证高分辨率分型EPT的需求。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/504c/10859402/31f834a0a57f/fgene-14-1290915-g001.jpg

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