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探索口服生物可利用的 PROTAC 的化学空间。

Exploring the chemical space of orally bioavailable PROTACs.

机构信息

Department of Molecular Biotechnology and Health Sciences, University of Torino, Piazza Nizza 44bis, 10126 Torino, Italy.

Department of Chemistry - BMC, Uppsala University, SE-75123 Uppsala, Sweden.

出版信息

Drug Discov Today. 2024 Apr;29(4):103917. doi: 10.1016/j.drudis.2024.103917. Epub 2024 Feb 14.


DOI:10.1016/j.drudis.2024.103917
PMID:38360147
Abstract

A principal challenge in the discovery of proteolysis targeting chimeras (PROTACs) as oral medications is their bioavailability. To facilitate drug design, it is therefore essential to identify the chemical space where orally bioavailable PROTACs are more likely to be situated. To this aim, we extracted structure-bioavailability insights from published data using traditional 2D descriptors, thereby shedding light on their potential and limitations as drug design tools. Subsequently, we describe cutting-edge experimental, computational and hybrid design strategies based on 3D descriptors, which show promise for enhancing the probability of discovering PROTACs with high oral bioavailability.

摘要

在发现可口服的蛋白水解靶向嵌合体(PROTACs)作为药物时,主要面临的挑战是其生物利用度。因此,为了促进药物设计,识别更有可能具有口服生物利用度的 PROTAC 所在的化学空间至关重要。为此,我们使用传统的 2D 描述符从已发表的数据中提取结构-生物利用度的见解,从而阐明了它们作为药物设计工具的潜力和局限性。随后,我们描述了基于 3D 描述符的前沿实验、计算和混合设计策略,这些策略有望提高发现具有高口服生物利用度的 PROTAC 的概率。

相似文献

[1]
Exploring the chemical space of orally bioavailable PROTACs.

Drug Discov Today. 2024-4

[2]
Current advances and development strategies of orally bioavailable PROTACs.

Eur J Med Chem. 2023-12-5

[3]
Structural and Physicochemical Features of Oral PROTACs.

J Med Chem. 2024-8-8

[4]
Design and Evaluation of a Low Hydrogen Bond Donor Count Fragment Screening Set to Aid Hit Generation of PROTACs Intended for Oral Delivery.

J Med Chem. 2023-6-8

[5]
Beyond Rule of Five and PROTACs in Modern Drug Discovery: Polarity Reducers, Chameleonicity, and the Evolving Physicochemical Landscape.

J Med Chem. 2024-4-11

[6]
Proteolysis targeting chimeras (PROTACs) in 'beyond rule-of-five' chemical space: Recent progress and future challenges.

Bioorg Med Chem Lett. 2019-7-1

[7]
Accelerating PROTACs Discovery Through a Direct-to-Biology Platform Enabled by Modular Photoclick Chemistry.

Adv Sci (Weinh). 2024-7

[8]
Orally Bioavailable Proteolysis-Targeting Chimeras: An Innovative Approach in the Golden Era of Discovering Small-Molecule Cancer Drugs.

Pharmaceuticals (Basel). 2024-4-12

[9]
Strategies for designing proteolysis targeting chimaeras (PROTACs).

Med Res Rev. 2022-5

[10]
Journey of Von Hippel-Lindau (VHL) E3 ligase in PROTACs design: From VHL ligands to VHL-based degraders.

Eur J Med Chem. 2024-2-5

引用本文的文献

[1]
Linker Methylation as a Strategy to Enhance PROTAC Oral Bioavailability: Insights from Molecular Properties and Conformational Analysis.

J Med Chem. 2025-8-14

[2]
Synthesis, biological evaluation and clinical trials of Cereblon-based PROTACs.

Commun Chem. 2025-7-29

[3]
New Multiparameter Index Is a Strong Predictor of Oral Bioavailability for Heterobifunctional Degraders.

ACS Med Chem Lett. 2025-6-3

[4]
Preparation and Characterization of Ternary Complexes to Improve the Solubility and Dissolution Performance of a Proteolysis-Targeting Chimera Drug.

Pharmaceutics. 2025-5-20

[5]
Linker-Determined Folding and Hydrophobic Interactions Explain a Major Difference in PROTAC Cell Permeability.

ACS Med Chem Lett. 2025-3-17

[6]
Rational Design of PROTAC Linkers Featuring Ferrocene as a Molecular Hinge to Enable Dynamic Conformational Changes.

J Am Chem Soc. 2025-4-23

[7]
Tau degradation in Alzheimer's disease: Mechanisms and therapeutic opportunities.

Alzheimers Dement. 2025-3

[8]
Impact of Linker Composition on VHL PROTAC Cell Permeability.

J Med Chem. 2025-1-9

[9]
Property-based optimisation of PROTACs.

RSC Med Chem. 2024-11-7

[10]
Molecular properties, including chameleonicity, as essential tools for designing the next generation of oral beyond rule of five drugs.

ADMET DMPK. 2024-8-27

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