Institute of Dairy Science, College of Animal Sciences, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Molecular Animal Nutrition, Ministry of Education, Zhejiang University, Hangzhou 310058, China.
Institute of Dairy Science, College of Animal Sciences, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Molecular Animal Nutrition, Ministry of Education, Zhejiang University, Hangzhou 310058, China; College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo 315100, China.
Carbohydr Polym. 2024 Apr 15;330:121828. doi: 10.1016/j.carbpol.2024.121828. Epub 2024 Jan 18.
Glycoside hydrolases (GHs) are known to depolymerize polysaccharides into oligo-/mono-saccharides, they are extensively used as additives for both animals feed and our food. Here we reported the characterization of IDSGH5-14(CD), a weakly-acidic mesophilic bifunctional mannanase/glucanase of GH5, originally isolated from sheep rumen microbes. Biochemical characterization studies revealed that IDSGH5-14(CD) exhibited preferential hydrolysis of mannan-like and glucan-like substrates. Interestingly, the enzyme exhibited significantly robust catalytic activity towards branched-substrates compared to linear polysaccharides (P < 0.05). Substrate hydrolysis pattern indicated that IDSGH5-14(CD) predominantly liberated oligosaccharides with a degree of polymerization (DP) of 3-7 as the end products, dramatically distinct from canonical endo-acting enzymes. Comparative modeling revealed that IDSGH5-14(CD) was mainly comprised of a (β/α)-barrel-like structure with a spacious catalytic cleft on surface, facilitating the enzyme to target high-DP or branched oligosaccharides. Molecular dynamics (MD) simulations further suggested that the branched-ligand, 6-α-D-galactosyl-mannohexose, was steadily accommodated within the catalytic pocket via a two-sided clamp formed by the aromatic residues. This study first reports a bifunctional GH5 enzyme that predominantly generates high-DP oligosaccharides, preferentially from branched-substrates. This provides novel insights into the catalytic mechanism and molecular underpinnings of polysaccharide depolymerization, with potential implications for feed additive development and high-DP oligosaccharides preparation.
糖苷水解酶(GHs)已知能够将多糖分解为寡糖/单糖,它们被广泛用作动物饲料和我们食物的添加剂。在这里,我们报道了 GH5 家族的一种弱酸性嗜热双功能甘露聚糖酶/葡聚糖酶 IDSGH5-14(CD)的特性,该酶最初从绵羊瘤胃微生物中分离得到。生化特性研究表明,IDSGH5-14(CD)优先水解类似甘露聚糖和类似葡聚糖的底物。有趣的是,与线性多糖相比,该酶对支链底物表现出显著更强的催化活性(P < 0.05)。底物水解模式表明,IDSGH5-14(CD)主要释放聚合度(DP)为 3-7 的低聚糖作为终产物,与典型的内切酶显著不同。比较建模表明,IDSGH5-14(CD)主要由一个(β/α)-桶状结构组成,表面有一个宽敞的催化裂缝,有利于酶靶向高 DP 或支链寡糖。分子动力学(MD)模拟进一步表明,支链配体,6-α-D-半乳糖基-甘露六糖,通过由芳香残基形成的两面夹稳定容纳在催化口袋中。本研究首次报道了一种主要产生高 DP 寡糖的双功能 GH5 酶,优先从支链底物产生。这为多糖降解的催化机制和分子基础提供了新的见解,对于饲料添加剂的开发和高 DP 寡糖的制备具有潜在的意义。