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基于机器学习的二硫键相关 lncRNA 特征可预测肝细胞癌的预后、免疫浸润和药物敏感性。

Machine learning-based disulfidptosis-related lncRNA signature predicts prognosis, immune infiltration and drug sensitivity in hepatocellular carcinoma.

机构信息

The Key Laboratory of Adolescent Health Assessment and Exercise Intervention of the Ministry of Education, East China Normal University, 500 Dongchuan Road, Shanghai, 200241, People's Republic of China.

Department of Veterinary Medicine, Shandong Vocational Animal Science and Veterinary College, Weifang, 261071, Shandong, People's Republic of China.

出版信息

Sci Rep. 2024 Feb 22;14(1):4354. doi: 10.1038/s41598-024-54115-8.


DOI:10.1038/s41598-024-54115-8
PMID:38388539
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10883983/
Abstract

Disulfidptosis a new cell death mode, which can cause the death of Hepatocellular Carcinoma (HCC) cells. However, the significance of disulfidptosis-related Long non-coding RNAs (DRLs) in the prognosis and immunotherapy of HCC remains unclear. Based on The Cancer Genome Atlas (TCGA) database, we used Least Absolute Shrinkage and Selection Operator (LASSO) and Cox regression model to construct DRL Prognostic Signature (DRLPS)-based risk scores and performed Gene Expression Omnibus outside validation. Survival analysis was performed and a nomogram was constructed. Moreover, we performed functional enrichment annotation, immune infiltration and drug sensitivity analyses. Five DRLs (AL590705.3, AC072054.1, AC069307.1, AC107959.3 and ZNF232-AS1) were identified to construct prognostic signature. DRLPS-based risk scores exhibited better predictive efficacy of survival than conventional clinical features. The nomogram showed high congruence between the predicted survival and observed survival. Gene set were mainly enriched in cell proliferation, differentiation and growth function related pathways. Immune cell infiltration in the low-risk group was significantly higher than that in the high-risk group. Additionally, the high-risk group exhibited higher sensitivity to Afatinib, Fulvestrant, Gefitinib, Osimertinib, Sapitinib, and Taselisib. In conclusion, our study highlighted the potential utility of the constructed DRLPS in the prognosis prediction of HCC patients, which demonstrated promising clinical application value.

摘要

二硫键程序性细胞死亡是一种新的细胞死亡方式,可导致肝癌(HCC)细胞死亡。然而,二硫键程序性细胞死亡相关长非编码 RNA(DRLs)在 HCC 预后和免疫治疗中的意义尚不清楚。本研究基于癌症基因组图谱(TCGA)数据库,采用最小绝对收缩和选择算子(LASSO)和 Cox 回归模型构建基于 DRL 预后特征(DRLPS)的风险评分,并进行基因表达综合数据库外部验证。进行生存分析并构建列线图。此外,我们进行了功能富集注释、免疫浸润和药物敏感性分析。鉴定出 5 个 DRL(AL590705.3、AC072054.1、AC069307.1、AC107959.3 和 ZNF232-AS1)构建预后特征。基于 DRLPS 的风险评分在预测生存方面优于传统临床特征。列线图显示预测生存与观察生存之间具有高度一致性。基因集主要富集在与细胞增殖、分化和生长功能相关的途径中。低风险组的免疫细胞浸润明显高于高风险组。此外,高危组对阿法替尼、氟维司群、吉非替尼、奥希替尼、萨替利昔单抗和塔西利昔单抗的敏感性更高。总之,本研究强调了构建的 DRLPS 在 HCC 患者预后预测中的潜在应用价值,具有有前景的临床应用价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80bd/10883983/af2ecce3514b/41598_2024_54115_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80bd/10883983/bbfe4709d9a5/41598_2024_54115_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80bd/10883983/163d78537a29/41598_2024_54115_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80bd/10883983/435c1cc07777/41598_2024_54115_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80bd/10883983/0aa308a1ff61/41598_2024_54115_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80bd/10883983/35378529aa7a/41598_2024_54115_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80bd/10883983/af2ecce3514b/41598_2024_54115_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80bd/10883983/bbfe4709d9a5/41598_2024_54115_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80bd/10883983/163d78537a29/41598_2024_54115_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80bd/10883983/435c1cc07777/41598_2024_54115_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80bd/10883983/0aa308a1ff61/41598_2024_54115_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80bd/10883983/35378529aa7a/41598_2024_54115_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80bd/10883983/af2ecce3514b/41598_2024_54115_Fig6_HTML.jpg

相似文献

[1]
Machine learning-based disulfidptosis-related lncRNA signature predicts prognosis, immune infiltration and drug sensitivity in hepatocellular carcinoma.

Sci Rep. 2024-2-22

[2]
A novel disulfidptosis-related lncRNA signature for predicting prognosis and potential targeted therapy in hepatocellular carcinoma.

Medicine (Baltimore). 2024-1-26

[3]
Development and validation of a novel disulfidptosis-related lncRNAs signature in patients with HPV-negative oral squamous cell carcinoma.

Sci Rep. 2024-6-23

[4]
Six-long non-coding RNA signature predicts recurrence-free survival in hepatocellular carcinoma.

World J Gastroenterol. 2019-1-14

[5]
A novel disulfidptosis-related lncRNAs signature for predicting survival and immune response in hepatocellular carcinoma.

Aging (Albany NY). 2024-1-4

[6]
Identification and characterization of a 25-lncRNA prognostic signature for early recurrence in hepatocellular carcinoma.

BMC Cancer. 2021-10-30

[7]
Constructed Risk Prognosis Model Associated with Disulfidptosis lncRNAs in HCC.

Int J Mol Sci. 2023-12-18

[8]
A novel cuproptosis-related lncRNA signature predicts the prognosis and immunotherapy for hepatocellular carcinoma.

Cancer Biomark. 2023

[9]
Development of a novel disulfidptosis-related lncRNA signature for prognostic and immune response prediction in clear cell renal cell carcinoma.

Sci Rep. 2024-1-5

[10]
Constructing a disulfidptosis-related prognostic signature of hepatocellular carcinoma based on single-cell sequencing and weighted co-expression network analysis.

Apoptosis. 2024-10

引用本文的文献

[1]
Multi‑cohort Validation Based on Disulfidptosis-Related lncRNAs for Predicting Prognosis and Immunotherapy Response of Esophageal Squamous Cell Carcinoma.

Onco Targets Ther. 2025-6-25

[2]
A disulfidptosis-related lncRNAs cluster to forecast the prognosis and immune landscapes of ovarian cancer.

Front Genet. 2024-7-9

本文引用的文献

[1]
Transcriptome data-based status of PI3K/AKT/mTOR pathway indicates heterogeneity and immune modulation in patients with pancreatic ductal adenocarcinoma.

J Gene Med. 2024-1

[2]
The DNA damage repair-related lncRNAs signature predicts the prognosis and immunotherapy response in gastric cancer.

Front Immunol. 2023

[3]
Osimertinib is a dual inhibitor of hepatocellular carcinoma and angiogenesis in an EGFR-independent manner, and synergizes with venetoclax.

J Cancer Res Clin Oncol. 2023-9

[4]
Taselisib moderates neuropathic pain through PI3K/AKT signaling pathway in a rat model of chronic constriction injury.

Brain Res Bull. 2023-7

[5]
Identification of a cuproptosis and copper metabolism gene-related lncRNAs prognostic signature associated with clinical and immunological characteristics of hepatocellular carcinoma.

Front Oncol. 2023-3-28

[6]
Actin cytoskeleton vulnerability to disulfide stress mediates disulfidptosis.

Nat Cell Biol. 2023-3

[7]
Neutrophil-activating therapy for the treatment of cancer.

Cancer Cell. 2023-2-13

[8]
Comprehensive analysis of cuproptosis-related lncRNAs in immune infiltration and prognosis in hepatocellular carcinoma.

BMC Bioinformatics. 2023-1-3

[9]
Cuproptosis-Related LncRNA Signature for Predicting Prognosis of Hepatocellular Carcinoma: A Comprehensive Analysis.

Dis Markers. 2022

[10]
Prognostic pyroptosis-related lncRNA signature predicts the efficacy of immunotherapy in hepatocellular carcinoma.

Biochem Biophys Rep. 2022-11-23

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