Qafoud Fatima, Elshrif Mohamed, Kunji Khalid, Althani Asma, Salam Amar, Al Suwaidi Jassim, Asaad Nidal, Darbar Dawood, Saad Mohamad
College of Health Sciences, Qatar University, Doha P.O. Box 2713, Qatar.
Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha P.O. Box 5825, Qatar.
J Clin Med. 2024 Feb 15;13(4):1102. doi: 10.3390/jcm13041102.
The current study explores the genetic underpinnings of cardiac arrhythmia phenotypes within Middle Eastern populations, which are under-represented in genomic medicine research. Whole-genome sequencing data from 14,259 individuals from the Qatar Biobank were used and contained 47.8% of Arab ancestry, 18.4% of South Asian ancestry, and 4.6% of African ancestry. The frequency of rare functional variants within a set of 410 candidate genes for cardiac arrhythmias was assessed. Polygenic risk score (PRS) performance for atrial fibrillation (AF) prediction was evaluated. This study identified 1196 rare functional variants, including 162 previously linked to arrhythmia phenotypes, with varying frequencies across Arab, South Asian, and African ancestries. Of these, 137 variants met the pathogenic or likely pathogenic (P/LP) criteria according to ACMG guidelines. Of these, 91 were in ACMG actionable genes and were present in 1030 individuals (~7%). Ten P/LP variants showed significant associations with atrial fibrillation < 2.4 × 10. Five out of ten existing PRSs were significantly associated with AF (e.g., PGS000727, = 0.03, OR = 1.43 [1.03, 1.97]). Our study is the largest to study the genetic predisposition to arrhythmia phenotypes in the Middle East using whole-genome sequence data. It underscores the importance of including diverse populations in genomic investigations to elucidate the genetic landscape of cardiac arrhythmias and mitigate health disparities in genomic medicine.
当前的研究探索了中东人群中心律失常表型的遗传基础,而这些人群在基因组医学研究中的代表性不足。研究使用了来自卡塔尔生物样本库的14259名个体的全基因组测序数据,其中阿拉伯血统占47.8%,南亚血统占18.4%,非洲血统占4.6%。评估了一组410个心律失常候选基因中罕见功能变异的频率。评估了多基因风险评分(PRS)对房颤(AF)预测的性能。本研究鉴定出1196个罕见功能变异,其中包括162个先前与心律失常表型相关的变异,在阿拉伯、南亚和非洲血统中的频率各不相同。其中,137个变异符合美国医学遗传学与基因组学学会(ACMG)指南中的致病或可能致病(P/LP)标准。其中,91个位于ACMG可操作基因中,存在于1030名个体中(约7%)。10个P/LP变异与房颤呈显著关联<2.4×10。现有的10个PRS中有5个与房颤显著相关(例如,PGS000727,=0.03,OR=1.43[1.03,1.97])。我们的研究是利用全基因组序列数据研究中东地区心律失常表型遗传易感性的最大规模研究。它强调了在基因组研究中纳入不同人群以阐明心律失常的遗传图谱并减少基因组医学中健康差距的重要性。