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双侧感音神经性听力损失的基因变异谱

Spectrum of genetic variants in bilateral sensorineural hearing loss.

作者信息

Ali Amanat, Tabouni Mohammed, Kizhakkedath Praseetha, Baydoun Ibrahim, Allam Mushal, John Anne, Busafared Faiza, Alnuaimi Ayesha, Al-Jasmi Fatma, Alblooshi Hiba

机构信息

Department of Genetics and Genomics, College of Medicine and Health Sciences, United Arab Emirates University, Al Ain, United Arab Emirates.

Department of Otolaryngology, Al Kuwait Hospital, Dubai, United Arab Emirates.

出版信息

Front Genet. 2024 Feb 12;15:1314535. doi: 10.3389/fgene.2024.1314535. eCollection 2024.

DOI:10.3389/fgene.2024.1314535
PMID:38410152
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10894970/
Abstract

Hearing loss (HL) is an impairment of auditory function with identified genetic forms that can be syndromic (30%) or non-syndromic (70%). HL is genetically heterogeneous, with more than 1,000 variants across 150 causative genes identified to date. The genetic diagnostic rate varies significantly depending on the population being tested. Countries with a considerably high rate of consanguinity provide a unique resource for studying rare forms of recessive HL. In this study, we identified genetic variants associated with bilateral sensorineural HL (SNHL) using whole-exome sequencing (WES) in 11 families residing in the United Arab Emirates (UAE). : We established the molecular diagnosis in six probands, with six different pathogenic or likely pathogenic variants in the genes , , and . One novel nonsense variant, :.Tyr1962Ter*, was identified in a homozygous state in one family, which has not been reported in any public database. and were found to be the most frequently associated genes in this study. In addition, six variants of uncertain significance (VUS) were detected in five probands in the genes , , , , and . In total, 12 variants were observed in eight genes. Among these variants, eight missense variants (66.7%), three nonsense variants (25.0%), and one frameshift (8.3%) were identified. The overall diagnostic rate of this study was 54.5%. Approximately 45.5% of the patients in this study came from consanguineous families. Understanding the genetic basis of HL provides insight for the clinical diagnosis of hearing impairment cases through the utilization of next-generation sequencing (NGS). Our findings contribute to the knowledge of the heterogeneous genetic profile of HL, especially in a population with a high rate of consanguineous marriage in the Arab population.

摘要

听力损失(HL)是一种听觉功能障碍,有已确定的遗传形式,可分为综合征型(30%)或非综合征型(70%)。HL具有遗传异质性,迄今为止已在150个致病基因中鉴定出1000多个变异。遗传诊断率因所检测的人群而异。近亲结婚率相当高的国家为研究罕见的隐性HL形式提供了独特的资源。在本研究中,我们使用全外显子组测序(WES)在居住在阿拉伯联合酋长国(UAE)的11个家庭中鉴定了与双侧感音神经性听力损失(SNHL)相关的遗传变异。我们在6名先证者中建立了分子诊断,在基因、和中发现了6种不同的致病或可能致病的变异。在一个家庭中发现了一个新的纯合无义变异:.Tyr1962Ter*,该变异尚未在任何公共数据库中报道。和被发现是本研究中最常相关的基因。此外,在5名先证者的基因、、、和中检测到6种意义未明的变异(VUS)。总共在8个基因中观察到12种变异。在这些变异中,鉴定出8种错义变异(66.7%)、3种无义变异(25.0%)和1种移码变异(8.3%)。本研究的总体诊断率为54.5%。本研究中约45.5%的患者来自近亲家庭。了解HL的遗传基础有助于通过利用下一代测序(NGS)对听力障碍病例进行临床诊断。我们的发现有助于了解HL的异质遗传图谱,尤其是在阿拉伯人群中近亲结婚率高的人群中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb31/10894970/e2e345b1047b/fgene-15-1314535-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb31/10894970/e767d2b203b1/fgene-15-1314535-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb31/10894970/b9313306cae0/fgene-15-1314535-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb31/10894970/e2e345b1047b/fgene-15-1314535-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb31/10894970/e767d2b203b1/fgene-15-1314535-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb31/10894970/b9313306cae0/fgene-15-1314535-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb31/10894970/e2e345b1047b/fgene-15-1314535-g003.jpg

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