Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, College of Pharmaceutical Sciences, Southwest University, Chongqing 400715, China.
Anal Chem. 2024 Mar 19;96(11):4597-4604. doi: 10.1021/acs.analchem.3c05554. Epub 2024 Mar 8.
DNA assemblies are commonly used in biosensing, particularly for the detection and imaging of microRNAs (miRNAs), which are biomarkers associated with tumor progression. However, the difficulty lies in the exploration of high-sensitivity analytical techniques for miRNA due to its limited presence in living cells. In this study, we introduced a DNA nanosphere (DS) enhanced catalytic hairpin assembly (CHA) system for the detection and imaging of intracellular miR-21. The single-stranded DNA with four palindromic portions and extending sequences at the terminal was annealed for assembling DS, which avoided the complex sequence design and high cost of long DNA strands. Benefiting from the multiple modification sites of DS, functional hairpins H1 (modified with Cy3 and BHQ2) and H2 were grafted onto the surface of DS for assembling DS-H1-H2 using a hybridization reaction. The DS-H1-H2 system utilized spatial confinement and the CHA reaction to amplify fluorescence signals of Cy3. This enabled highly sensitive and rapid detection of miR-21 in the range from 0.05 to 3.5 nM. The system achieved a limit of determination (LOD) of 2.0 pM, which was 56 times lower than that of the control CHA circuit with freedom hairpins. Additionally, the sensitivity was improved by 8 times. Moreover, DS-H1-H2 also showed an excellent imaging capability for endogenous miR-21 in tumor cells. This was due to enhanced cell internalization efficiency, accelerated reaction kinetics, and improved biostability. The imaging strategy was shown to effectively monitor the dynamic content of miR-21 in live cancer cells and differentiate various cells. In general, the simple nanostructure DS not only enhanced the detection and imaging capability of the conventional probe but also could be easily integrated with the reported DNA-free probe, indicating a wide range of potential applications.
DNA 组装物常用于生物传感,特别是用于检测和成像 microRNAs(miRNAs),miRNAs 是与肿瘤进展相关的生物标志物。然而,由于其在活细胞中的含量有限,因此难以探索用于 miRNA 的高灵敏度分析技术。在这项研究中,我们引入了一种 DNA 纳米球(DS)增强的催化发夹组装(CHA)系统,用于检测和成像细胞内的 miR-21。具有四个回文部分和末端延伸序列的单链 DNA 退火以组装 DS,这避免了复杂的序列设计和长 DNA 链的高成本。受益于 DS 的多个修饰位点,功能发夹 H1(用 Cy3 和 BHQ2 修饰)和 H2 被接枝到 DS 的表面,用于通过杂交反应组装 DS-H1-H2。DS-H1-H2 系统利用空间限制和 CHA 反应来放大 Cy3 的荧光信号。这使得在 0.05 到 3.5 nM 的范围内能够对 miR-21 进行高度灵敏和快速的检测。该系统的测定下限(LOD)为 2.0 pM,比具有自由发夹的对照 CHA 电路低 56 倍。此外,灵敏度提高了 8 倍。此外,DS-H1-H2 还在肿瘤细胞中表现出对内源性 miR-21 的出色成像能力。这是由于增强了细胞内化效率、加速了反应动力学和提高了生物稳定性。该成像策略被证明能够有效地监测活癌细胞中 miR-21 的动态含量,并区分各种细胞。总的来说,简单的纳米结构 DS 不仅增强了传统探针的检测和成像能力,而且还可以很容易地与报道的无 DNA 探针集成,这表明它具有广泛的潜在应用。
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