Demir Ğarip, Valjakka Jarkko, Turunen Ossi, Aktaş Fatih, Binay Barış
Department of Molecular Biology and Genetics, Gebze Technical University, 41400, Gebze, Kocaeli, Turkey.
Faculty of Medicine and Health Technology, Tampere University, FI-33100, Tampere, Finland.
Heliyon. 2024 Feb 29;10(5):e26899. doi: 10.1016/j.heliyon.2024.e26899. eCollection 2024 Mar 15.
Unnatural amino acids (UAAs) offer significant promise in a wide range of applications, including drug discovery, the custom design of peptides and proteins, and their utility and use as markers for monitoring molecular interactions in biological research. The synthesis of UAAs presents a formidable challenge and can be classified into two primary categories: enzymatic and chemical synthesis. Notably, the enzymatic route, specifically asymmetric synthesis, emerges as a an attractive method for procuring enantiopure UAAs with high efficiency, owing to its streamlined and concise reaction mechanism. The current study investigated the reductive amination activity mechanisms of alanine dehydrogenase (L-AlaDH), sourced from a combination of newly and previously characterized microorganisms. Our principal aim was to evaluate the catalytic efficiency of these L-AlaDH enzymes concerning a range of specific ketoacids and pyruvate to ascertain their capability for facilitating the production of both natural and unnatural amino acids. After the characterization processes, mutation points for AlaDH were determined and as a result of the mutations, mutants that could use ketocaproate and ketovalerate more effectively than the wild type were obtained. Among the enzymes studied, AlaDH exhibited the highest specific activity against pyruvate, 173 U/mg, and a K value of 1.3 mM. AlaDH displayed the most favourable catalytic efficiency with a rate constant of 170 smM. On the other hand, AlaDH demonstrated the highest catalytic efficiency against α-ketobutyrate (34.0 smM) and α-ketovalerate (2.7 smM). Of the enzymes investigated in the study, AlaDH exhibited the highest effectiveness among bacterial enzymes in catalyzing ketocaproate with a measured catalytic efficiency of about 0.6 smM and a K value of approximately 0.3 mM. These findings provide valuable insights into the substrate specificity and catalytic performance of L-AlaDHs, enhancing our understanding of their potential applications in various biocatalytic processes.
非天然氨基酸(UAA)在广泛的应用中展现出巨大潜力,包括药物研发、肽和蛋白质的定制设计,以及在生物研究中作为监测分子相互作用的标记物的效用和用途。非天然氨基酸的合成是一项艰巨的挑战,可分为两大类:酶促合成和化学合成。值得注意的是,酶促途径,特别是不对称合成,由于其反应机制简洁高效,已成为一种极具吸引力的高效获取对映体纯非天然氨基酸的方法。本研究调查了源自新鉴定和先前已鉴定微生物组合的丙氨酸脱氢酶(L-AlaDH)的还原胺化活性机制。我们的主要目的是评估这些L-AlaDH酶对一系列特定酮酸和丙酮酸的催化效率,以确定它们促进天然和非天然氨基酸生产的能力。经过表征过程,确定了AlaDH的突变点,通过突变获得了比野生型更能有效利用己酮酸和α-酮戊酸的突变体。在所研究的酶中,AlaDH对丙酮酸表现出最高的比活性,为173 U/mg,K值为1.3 mM。AlaDH表现出最有利的催化效率,速率常数为170 s mM。另一方面,AlaDH对α-酮丁酸(34.0 s mM)和α-酮戊酸(2.7 s mM)表现出最高的催化效率。在该研究中调查的酶中,AlaDH在催化己酮酸方面在细菌酶中表现出最高效率,测得的催化效率约为0.6 s mM,K值约为0.3 mM。这些发现为L-AlaDHs的底物特异性和催化性能提供了有价值的见解,增进了我们对它们在各种生物催化过程中潜在应用的理解。