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1级脑膜瘤的下一代DNA测序:血管瘤型和砂粒体型脑膜瘤病例报告

Next-Generation DNA Sequencing of Grade 1 Meningioma Tumours: A Case Report of Angiomatous and Psammomatous Meningiomas.

作者信息

Taher Mohiuddin M, Ashour Khalid M, Althaqafi Bashayer A, Mansouri Albatool, Al-Harbi Arwa A, Filfilan Weam, Bakhsh Ghassan Y, Bantan Najwa A, Saeed Muhammad, AlQuthami Khalid

机构信息

Science and Technology Unit and Deanship of Scientific Research, Umm Al-Qura University, Makkah, SAU.

Medical Genetics, Umm Al-Qura University, Makkah, SAU.

出版信息

Cureus. 2024 Feb 11;16(2):e54009. doi: 10.7759/cureus.54009. eCollection 2024 Feb.

Abstract

We performed the next-generation sequencing (NGS) analysis of a rare grade 1 brain meningioma (angiomatous type) and a common grade 1 spinal meningioma (psammomatous type) and compared their mutation profiling. The data were analysed using the Ion Reporter 5.16 programme (Thermo Fisher Scientific, Waltham, MA). Sequencing analysis identified 10 novel variants and two previously reported variants that were common between these two tumours. Nine variants were missense, which included an insertion in EGFR c.1819_1820insCA, causing frameshifting, and a single nucleotide deletion in HRAS and HNF1A genes, causing frameshifting in these genes. These were common variants identified for both tumours. Also, 10 synonymous variants and 10 intronic variants were common between these two tumours. In intronic variants, two were splice site_5' variants (acceptor site variants). Typical of the angiomatous type tumour, there were 11 novel and six previously reported variants that were not found in the psammomatous tumour; three variants were synonymous, 11 were missense mutations, and three were deletions causing frameshifting. The deletion variants were in the SMARCB1, CDH1, and KDR genes. In contrast, eight novel and five previously reported variants were found in the psammomatous meningioma tumour. In this tumour, two variants were synonymous: a deletion causing a frameshifting in [(c.3920delT; p. (Ile1307fs)], and a two-base pair insertion and deletion (INDEL) [(c.3986_3987delACinsGT; p. (His1329Arg)] both in the APC gene were also found. Among our findings, we have identified that ALK, VHL, CTNNB1, EGFR, ERBB4, PDGFRA, KDR, SMO, ABL1, HRAS, ATM, HNF1A, FLT3, and RB1 mutations are common for psammomatous meningioma and angiomatous tumours. Variants typical for angiomatous (brain) meningioma are PIK3CA, KIT, PTPN11, CDH1, SMAD4, and SMARCB1; the variants typical for psammomatous meningioma are APC, FGFR2, HNF1A, STK11, and JAK3. The RET splice variant (c.1880-2A>C) found in both meningioma tumours is reported (rs193922699) as likely pathogenic in the Single Nucleotide Polymorphism Database (dbSNP). All missense variants detected in these two meningiomas are found in the cancer-driver genes. The eight variants we found in genes such as EGFR, PDGFRA, SMO, FLT3, PIK3CA, PTPN11, CDH1, and RB1 are glioma-driver genes. We did not find any mutations in genes such as BRAF, IDH1, CDKN2A, PTEN, and TP53, which are also listed as cancer-driver genes in gliomas. Mutation profiling utilising NGS technology in meningiomas could help in the accurate diagnosis and classification of these tumours and also in developing more effective treatments.

摘要

我们对一例罕见的1级脑脑膜瘤(血管瘤型)和一例常见的1级脊髓脑膜瘤(砂粒体型)进行了二代测序(NGS)分析,并比较了它们的突变谱。数据使用Ion Reporter 5.16程序(赛默飞世尔科技,马萨诸塞州沃尔瑟姆)进行分析。测序分析鉴定出10个新变体和两个先前报道的这两种肿瘤共有的变体。9个变体为错义突变,其中包括表皮生长因子受体(EGFR)基因c.1819_1820insCA处的一个插入,导致移码,以及HRAS和肝细胞核因子1α(HNF1A)基因中的一个单核苷酸缺失,导致这些基因移码。这些是两种肿瘤共有的常见变体。此外,这两种肿瘤之间有10个同义变体和10个内含子变体。在内含子变体中,两个是剪接位点5'变体(受体位点变体)。血管瘤型肿瘤的典型特征是,有11个新变体和6个先前报道的变体在砂粒体型肿瘤中未发现;3个变体为同义变体,11个为错义突变,3个为导致移码的缺失。缺失变体存在于SWI/SNF相关、基质相关、肌动蛋白依赖的调节染色质亚家族成员B1(SMARCB1)、钙黏蛋白1(CDH1)和激酶插入域受体(KDR)基因中。相比之下,在砂粒体型脑膜瘤中发现了8个新变体和5个先前报道的变体。在该肿瘤中,两个变体为同义变体:一个缺失导致[(c.3920delT; p. (Ile1307fs)]移码,并且在腺瘤性息肉病(APC)基因中还发现了一个两碱基对的插入和缺失(INDEL)[(c.3986_3987delACinsGT; p. (His1329Arg)]。在我们的研究结果中,我们已经确定间变性淋巴瘤激酶(ALK)、von Hippel-Lindau肿瘤抑制因子(VHL)、β-连环蛋白(CTNNB1)、EGFR、表皮生长因子受体4(ERBB4)、血小板衍生生长因子受体α(PDGFRA)、KDR、平滑肌瘤相关蛋白(SMO)、Abelson鼠白血病病毒癌基因同源物1(ABL1)、HRAS、共济失调毛细血管扩张症突变基因(ATM)、HNF1A、FMS样酪氨酸激酶3(FLT3)和视网膜母细胞瘤1(RB1)突变在砂粒体型脑膜瘤和血管瘤型肿瘤中很常见。血管瘤型(脑)脑膜瘤的典型变体是磷脂酰肌醇-4,5-二磷酸3-激酶催化亚基α(PIK3CA)、原癌基因c-KIT、蛋白酪氨酸磷酸酶非受体型11(PTPN11)、CDH1、SMAD家族成员4(SMAD4)和SMARCB1;砂粒体型脑膜瘤的典型变体是APC、成纤维细胞生长因子受体2(FGFR2)、HNF1A、丝氨酸/苏氨酸蛋白激酶11(STK11)和Janus激酶3(JAK3)。在两种脑膜瘤中均发现的RET剪接变体(c.1880-2A>C)在单核苷酸多态性数据库(dbSNP)中被报道(rs193922699)可能具有致病性。在这两种脑膜瘤中检测到的所有错义变体均存在于癌症驱动基因中。我们在EGFR、PDGFRA、SMO、FLT3、PIK3CA、PTPN11、CDH1和RB1等基因中发现的8个变体是胶质瘤驱动基因。我们在BRAF、异柠檬酸脱氢酶1(IDH1)、细胞周期蛋白依赖性激酶抑制剂2A(CDKN2A)、第10号染色体缺失的磷酸酶及张力蛋白同源物(PTEN)和肿瘤蛋白p53(TP53)等基因中未发现任何突变,这些基因在胶质瘤中也被列为癌症驱动基因。利用NGS技术对脑膜瘤进行突变谱分析有助于这些肿瘤的准确诊断和分类,也有助于开发更有效的治疗方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b67a/10929682/fd31e583a59f/cureus-0016-00000054009-i01.jpg

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本文引用的文献

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4
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5
The 2021 WHO Classification of Tumors of the Central Nervous System: a summary.
Neuro Oncol. 2021 Aug 2;23(8):1231-1251. doi: 10.1093/neuonc/noab106.
6
Meningioma: not always a benign tumor. A review of advances in the treatment of meningiomas.
CNS Oncol. 2021 Jun 1;10(2):CNS72. doi: 10.2217/cns-2021-0003. Epub 2021 May 21.
7
Meningioma: A Review of Clinicopathological and Molecular Aspects.
Front Oncol. 2020 Oct 23;10:579599. doi: 10.3389/fonc.2020.579599. eCollection 2020.
8
Mutation profiling of anaplastic ependymoma grade III by Ion Proton next generation DNA sequencing.
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10
STK11 mutation status is associated with decreased survival in meningiomas.
Neurol Sci. 2020 Sep;41(9):2585-2589. doi: 10.1007/s10072-020-04372-y. Epub 2020 Apr 7.

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