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两种融合蛋白的故事:了解人类呼吸道合胞病毒和偏肺病毒的亚稳定性及其对未切割前融合封闭三聚体合理设计的启示

A tale of two fusion proteins: understanding the metastability of human respiratory syncytial virus and metapneumovirus and implications for rational design of uncleaved prefusion-closed trimers.

作者信息

Lee Yi-Zong, Han Jerome, Zhang Yi-Nan, Ward Garrett, Gomes Keegan Braz, Auclair Sarah, Stanfield Robyn L, He Linling, Wilson Ian A, Zhu Jiang

机构信息

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California 92037, USA.

Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, California 92037, USA.

出版信息

bioRxiv. 2024 Mar 8:2024.03.07.583986. doi: 10.1101/2024.03.07.583986.

Abstract

Respiratory syncytial virus (RSV) and human metapneumovirus (hMPV) cause human respiratory diseases and are major targets for vaccine development. In this study, we designed uncleaved prefusion-closed (UFC) trimers for the fusion (F) proteins of both viruses by examining mutations critical to F metastability. For RSV, we assessed four previous prefusion F designs, including the first and second generations of DS-Cav1, SC-TM, and 847A. We then identified key mutations that can maintain prefusion F in a native-like, closed trimeric form (up to 76%) without introducing any interprotomer disulfide bond. For hMPV, we developed a stable UFC trimer with a truncated F-F linkage and an interprotomer disulfide bond. Tens of UFC constructs were characterized by negative-stain electron microscopy (nsEM), x-ray crystallography (11 RSV-F and one hMPV-F structures), and antigenic profiling. Using an optimized RSV-F UFC trimer as bait, we identified three potent RSV neutralizing antibodies (NAbs) from a phage-displayed human antibody library, with a public NAb lineage targeting sites Ø and V and two cross-pneumovirus NAbs recognizing site III. In mouse immunization, rationally designed RSV-F and hMPV-F UFC trimers induced robust antibody responses with high neutralizing titers. Our study provides a foundation for future prefusion F-based RSV and hMPV vaccine development.

摘要

呼吸道合胞病毒(RSV)和人偏肺病毒(hMPV)可引发人类呼吸道疾病,是疫苗研发的主要目标。在本研究中,我们通过研究对F亚稳态至关重要的突变,为这两种病毒的融合(F)蛋白设计了未切割的预融合封闭(UFC)三聚体。对于RSV,我们评估了之前的四种预融合F设计,包括第一代和第二代DS-Cav1、SC-TM和847A。然后,我们确定了能够将预融合F维持在类似天然的封闭三聚体形式(高达76%)而不引入任何亚基间二硫键的关键突变。对于hMPV,我们开发了一种具有截短的F-F连接和亚基间二硫键的稳定UFC三聚体。通过负染电子显微镜(nsEM)、X射线晶体学(11种RSV-F和1种hMPV-F结构)和抗原分析对数十种UFC构建体进行了表征。使用优化的RSV-F UFC三聚体作为诱饵,我们从噬菌体展示的人抗体库中鉴定出三种有效的RSV中和抗体(NAb),一种靶向位点Ø和V的公共NAb谱系以及两种识别位点III的交叉肺炎病毒NAb。在小鼠免疫实验中,合理设计的RSV-F和hMPV-F UFC三聚体诱导了具有高中和滴度的强烈抗体反应。我们的研究为未来基于预融合F的RSV和hMPV疫苗研发奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b706/10942449/64f815a87be9/nihpp-2024.03.07.583986v1-f0001.jpg

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