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远离平衡态细胞中的自组织计算

Self-organized computation in the far-from-equilibrium cell.

作者信息

England Jeremy L

机构信息

School of Physics, Georgia Institute of Technology, 837 State St NW, Atlanta, Georgia 30332, USA and GSK.ai, GlaxoSmithKline, 46 Menachem Begin, Ninth Floor, Tel Aviv, Israel.

出版信息

Biophys Rev (Melville). 2022 Dec 27;3(4):041303. doi: 10.1063/5.0103151. eCollection 2022 Dec.

Abstract

Recent progress in our understanding of the physics of self-organization in active matter has pointed to the possibility of spontaneous collective behaviors that effectively compute things about the patterns in the surrounding patterned environment. Here, we describe this progress and speculate about its implications for our understanding of the internal organization of the living cell.

摘要

我们对活性物质自组织物理学的理解取得的最新进展表明,可能存在自发的集体行为,这些行为能够有效地计算周围有图案环境中的图案信息。在此,我们描述这一进展,并推测其对我们理解活细胞内部组织的意义。

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Cell. 2018 Nov 29;175(6):1481-1491.e13. doi: 10.1016/j.cell.2018.10.057.
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Phys Rev E. 2018 Mar;97(3-1):032115. doi: 10.1103/PhysRevE.97.032115.
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Liquid phase condensation in cell physiology and disease.
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