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通过定量构效关系(QSAR)、分子对接、分子动力学(MD)模拟、MM-GBSA计算,鉴定β-环戊二烯衍生的单羰基姜黄素类似物作为潜在的白细胞介素-6抑制剂用于治疗伤口愈合。

Identification of β-cycloidal-derived mono-carbonyl curcumin analogs as potential interleukin-6 inhibitor to treat wound healing through QSAR, molecular docking, MD simulation, MM-GBSA calculation.

作者信息

Forid Md Shaekh, Patil Rajesh B, Roney Miah, Huq A K M Moyeenul, Mohd Nasir Mohd Hamzah Bin, Mohd Aluwi Mohd Fadhlizil Fasihi, Azuri Muhammad Saupi, Wan Ishak Wan Maznah Binti

机构信息

Faculty of Chemical and Process Engineering Technology, Universiti Malaysia Pahang Al-Sultan Abdullah, Lebuhraya Persiaran Tun Khalil Yaakob, Kuantan, Pahang, Malaysia.

Department of Pharmaceutical Chemistry, Sinhgad Technical Education Societys, Sinhgad College of Pharmacy, Pune, Maharashtra, India.

出版信息

J Biomol Struct Dyn. 2024 Mar 23:1-12. doi: 10.1080/07391102.2024.2331089.

Abstract

Interleukin-6 (IL-6) is a cytokine that involved in the different phases of wound healing. It is responsible for promoting inflammation, regulating tissue repair scar formation, stimulating the production of extracellular matrix components and recruiting immune cells to the wound site. Therefore, suppressing IL-6 is beneficial for wound healing. However, no small molecules are currently available in the market against the IL-6. As a result, this research gap motivates us to find a potential inhibitor. This study aimed to investigate the wound healing potential of novel β-cycloidal-derived mono-carbonyl curcumin analogs reported in the literature through screening a series of computational studies. The calculated pIC50 value of 18 compounds (below 10) showed that all compounds may have potential therapeutic efficacy. Molecular docking studies revealed that compound C12 (-45.6044 kcal/mol) bound most strongly in the active site of IL-6 compared to the FDA-approved drug clindamycin (-42.3223). The Molecular Dynamic (MD) simulation displayed that lead compound C12 had the highest stability in the active site of IL-6 compared to the reference drug clindamycin. Furthermore, MMGBSA results indicated that C12 (-20.28 kcal/mol) had the highest binding energy compared to clindamycin (-8.36 kcal/mol). The ADMET analysis predicted that C12 are favourable for drug candidates. This study recommended compound C12 as a lead IL-6 inhibitor for future testing and development as therapeutics for wound healing.

摘要

白细胞介素-6(IL-6)是一种参与伤口愈合不同阶段的细胞因子。它负责促进炎症反应、调节组织修复疤痕形成、刺激细胞外基质成分的产生以及将免疫细胞招募到伤口部位。因此,抑制IL-6对伤口愈合有益。然而,目前市场上尚无针对IL-6的小分子药物。因此,这一研究空白促使我们寻找一种潜在的抑制剂。本研究旨在通过一系列计算研究筛选文献中报道的新型β-环糊精衍生的单羰基姜黄素类似物的伤口愈合潜力。18种化合物的计算pIC50值(低于10)表明所有化合物可能具有潜在的治疗效果。分子对接研究表明,与FDA批准的药物克林霉素(-42.3223)相比,化合物C12(-45.6044 kcal/mol)在IL-6的活性位点结合最紧密。分子动力学(MD)模拟显示,与参考药物克林霉素相比,先导化合物C12在IL-6的活性位点具有最高的稳定性。此外,MMGBSA结果表明,与克林霉素(-8.36 kcal/mol)相比,C12(-20.28 kcal/mol)具有最高的结合能。ADMET分析预测C12有利于作为候选药物。本研究推荐化合物C12作为一种先导IL-6抑制剂,用于未来作为伤口愈合治疗药物的测试和开发。

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