Department of Radiology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology.
Department of Radiology, University of Colorado Denver Anschutz Medical Campus, Aurora, CO, USA.
Int J Surg. 2024 Jul 1;110(7):4221-4230. doi: 10.1097/JS9.0000000000001358.
Accurate preoperative prediction of the pathological grade of clear cell renal cell carcinoma (ccRCC) is crucial for optimal treatment planning and patient outcomes. This study aims to develop and validate a deep-learning (DL) algorithm to automatically segment renal tumours, kidneys, and perirenal adipose tissue (PRAT) from computed tomography (CT) images and extract radiomics features to predict the pathological grade of ccRCC.
In this cross-ethnic retrospective study, a total of 614 patients were divided into a training set (383 patients from the local hospital), an internal validation set (88 patients from the local hospital), and an external validation set (143 patients from the public dataset). A two-dimensional TransUNet-based DL model combined with the train-while-annotation method was trained for automatic volumetric segmentation of renal tumours, kidneys, and visceral adipose tissue (VAT) on images from two groups of datasets. PRAT was extracted using a dilation algorithm by calculating voxels of VAT surrounding the kidneys. Radiomics features were subsequently extracted from three regions of interest of CT images, adopting multiple filtering strategies. The least absolute shrinkage and selection operator (LASSO) regression was used for feature selection, and the support vector machine (SVM) for developing the pathological grading model. Ensemble learning was used for imbalanced data classification. Performance evaluation included the Dice coefficient for segmentation and metrics such as accuracy and area under curve (AUC) for classification. The WHO/International Society of Urological Pathology (ISUP) grading models were finally interpreted and visualized using the SHapley Additive exPlanations (SHAP) method.
For automatic segmentation, the mean Dice coefficient achieved 0.836 for renal tumours and 0.967 for VAT on the internal validation dataset. For WHO/ISUP grading, a model built with features of PRAT achieved a moderate AUC of 0.711 (95% CI, 0.604-0.802) in the internal validation set, coupled with a sensitivity of 0.400 and a specificity of 0.781. While model built with combination features of the renal tumour, kidney, and PRAT showed an AUC of 0.814 (95% CI, 0.717-0.889) in the internal validation set, with a sensitivity of 0.800 and a specificity of 0.753, significantly higher than the model built with features solely from tumour lesion (0.760; 95% CI, 0.657-0.845), with a sensitivity of 0.533 and a specificity of 0.767.
Automated segmentation of kidneys and visceral adipose tissue (VAT) through TransUNet combined with a conventional image morphology processing algorithm offers a standardized approach to extract PRAT with high reproducibility. The radiomics features of PRAT and tumour lesions, along with machine learning, accurately predict the pathological grade of ccRCC and reveal the incremental significance of PRAT in this prediction.
准确预测透明细胞肾细胞癌(ccRCC)的病理分级对于制定最佳治疗方案和改善患者预后至关重要。本研究旨在开发和验证一种深度学习(DL)算法,以自动分割 CT 图像中的肾肿瘤、肾脏和肾周脂肪组织(PRAT),并提取放射组学特征来预测 ccRCC 的病理分级。
本项跨种族回顾性研究共纳入 614 例患者,分为训练集(383 例来自当地医院)、内部验证集(88 例来自当地医院)和外部验证集(143 例来自公共数据集)。采用二维 TransUNet 为基础的 DL 模型结合训练时注释方法对两组数据集的图像进行自动容积分割肾肿瘤、肾脏和内脏脂肪组织(VAT)。采用膨胀算法计算肾脏周围 VAT 的体素来提取 PRAT。随后从 CT 图像的三个感兴趣区域提取放射组学特征,采用多种滤波策略。采用最小绝对收缩和选择算子(LASSO)回归进行特征选择,采用支持向量机(SVM)建立病理分级模型。采用集成学习方法进行不平衡数据分类。性能评估包括分割的 Dice 系数和分类的准确性和曲线下面积(AUC)等指标。最后,采用 SHapley Additive exPlanations(SHAP)方法对世界卫生组织/国际泌尿病理学会(ISUP)分级模型进行解释和可视化。
在自动分割方面,内部验证数据集上肾肿瘤和 VAT 的平均 Dice 系数分别为 0.836 和 0.967。对于 WHO/ISUP 分级,基于 PRAT 特征构建的模型在内部验证集中的 AUC 为 0.711(95%CI,0.604-0.802),灵敏度为 0.400,特异性为 0.781。而基于肾肿瘤、肾脏和 PRAT 联合特征构建的模型在内部验证集中的 AUC 为 0.814(95%CI,0.717-0.889),灵敏度为 0.800,特异性为 0.753,显著高于仅基于肿瘤病变特征构建的模型(0.760;95%CI,0.657-0.845),灵敏度为 0.533,特异性为 0.767。
通过 TransUNet 结合常规图像形态处理算法对肾脏和内脏脂肪组织(VAT)进行自动分割,为提取具有高重复性的 PRAT 提供了一种标准化方法。PRAT 和肿瘤病变的放射组学特征以及机器学习可准确预测 ccRCC 的病理分级,并揭示了 PRAT 在预测中的增量意义。