Department of Chemistry, University of Florida, P.O. Box 117200, Gainesville, Florida 32611, United States.
George and Josephine Butler Polymer Research Laboratory, University of Florida, Gainesville, Florida 32611, United States.
J Phys Chem B. 2024 Apr 25;128(16):3919-3928. doi: 10.1021/acs.jpcb.4c00405. Epub 2024 Apr 16.
The surface hydration diffusivity of Lipase A (BSLA) has been characterized by low-field Overhauser dynamic nuclear polarization (ODNP) relaxometry using a series of spin-labeled constructs. Sites for spin-label incorporation were previously designed via an atomistic computational approach that screened for surface exposure, reflective of the surface hydration comparable to other proteins studied by this method, as well as minimal impact on protein function, dynamics, and structure of BSLA by excluding any surface site that participated in greater than 30% occupancy of a hydrogen bonding network within BSLA. Experimental ODNP relaxometry coupling factor results verify the overall surface hydration behavior for these BSLA spin-labeled sites similar to other globular proteins. Here, by plotting the ODNP parameters of relative diffusive water versus the relative bound water, we introduce an effective "phase-space" analysis, which provides a facile visual comparison of the ODNP parameters of various biomolecular systems studied to date. We find notable differences when comparing BSLA to other systems, as well as when comparing different clusters on the surface of BSLA. Specifically, we find a grouping of sites that correspond to the spin-label surface location within the two main hydrophobic core clusters of the branched aliphatic amino acids isoleucine, leucine, and valine cores observed in the BSLA crystal structure. The results imply that hydrophobic clustering may dictate local surface hydration properties, perhaps through modulation of protein conformations and samplings of the unfolded states, providing insights into how the dynamics of the hydration shell is coupled to protein motion and fluctuations.
通过使用一系列自旋标记构建体,使用低场 Overhauser 动态核极化 (ODNP) 弛豫测量法对脂肪酶 A (BSLA) 的表面水合扩散系数进行了表征。自旋标记掺入的位点先前通过原子计算方法设计,该方法筛选出表面暴露的位点,反映了与通过该方法研究的其他蛋白质相当的表面水合作用,以及对 BSLA 的蛋白质功能、动力学和结构的最小影响,排除了任何参与 BSLA 氢键网络大于 30%占据的表面位点。实验 ODNP 弛豫测量偶联因子结果验证了这些 BSLA 自旋标记位点的整体表面水合行为类似于其他球状蛋白质。在这里,通过绘制相对扩散水的 ODNP 参数与相对结合水的 ODNP 参数,可以引入一种有效的“相空间”分析,该分析为迄今为止研究的各种生物分子系统的 ODNP 参数提供了一种简便的直观比较。与其他系统相比,以及与 BSLA 表面上的不同簇相比,我们发现了明显的差异。具体而言,我们发现了一组位点,这些位点与 BSLA 晶体结构中观察到的支链脂肪族氨基酸异亮氨酸、亮氨酸和缬氨酸核心的两个主要疏水性核心簇内的自旋标记表面位置相对应。结果表明,疏水性聚类可能决定局部表面水合性质,也许是通过调节蛋白质构象和展开状态的采样,深入了解水合壳的动力学如何与蛋白质运动和波动相关联。