Aarabi Mahdi, Pandey Ankit, Poirier Bill
Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas, USA.
J Comput Chem. 2024 Jun 5;45(15):1261-1278. doi: 10.1002/jcc.27324. Epub 2024 Feb 14.
In this work, the code, developed previously by the authors to find "holes" as well as legitimate transition states in existing potential energy surface (PES) functions [JPC Lett. 11, 6468 (2020)], is retooled to perform on-the-fly "direct dynamics"-type PES explorations, as well as automatic construction of new PES functions. In all of these contexts, the chief advantage of over other methods is its ability to globally map the PES, thereby determining the most relevant regions of configuration space quickly and reliably-even when the dimensionality is rather large. Here, is used to generate a uniformly spaced grid of density functional theory (DFT) or ab initio points, truncated over the relevant regions, which can then be used to either: (a) hone in precisely on PES features such as minima and transition states, or; (b) create a new PES function automatically, via interpolation. Proof of concept is demonstrated via application to three molecular systems: water (H O), (reduced-dimensional) methane (CH ), and methylene imine (CH NH).
在这项工作中,作者之前开发的用于在现有势能面(PES)函数中寻找“孔洞”以及合理过渡态的代码[《化学物理快报》11, 6468 (2020)],经过重新调整,以执行即时“直接动力学”类型的PES探索以及新PES函数的自动构建。在所有这些情况下,与其他方法相比,其主要优势在于能够全局映射PES,从而快速且可靠地确定构型空间中最相关的区域——即使维度相当大。在此,该代码用于生成均匀间隔的密度泛函理论(DFT)或从头算点的网格,在相关区域进行截断,然后可用于:(a)精确聚焦于PES特征,如极小值和过渡态,或者;(b)通过插值自动创建新的PES函数。通过应用于三个分子系统:水(H₂O)、(降维的)甲烷(CH₄)和亚甲基亚胺(CH₂NH)来证明概念验证。