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DNA 条形码参考文库构建原则。

Principles for Constructing DNA Barcode Reference Libraries.

机构信息

Department of Environmental Conservation, University of Massachusetts, Amherst, MA, USA.

出版信息

Methods Mol Biol. 2024;2744:491-502. doi: 10.1007/978-1-0716-3581-0_29.

Abstract

All DNA barcode methods rely on reference sequences linked to well-curated voucher specimens. Definitions for and locations of DNA barcode reference libraries are not standardized, and vary throughout the literature. Standardizing, and centralizing reference specimens would provide an unambiguous source, analogous to reference genomes, to reproduce identifications and improve a library. This chapter proposes a working definition of a DNA barcode reference library, consistent with DNA barcode data standards, along with principles and methods to consider when producing or using such a library. These methods allow explicit traceback to sequence-sources which elevate the value of voucher specimens, and create a potential for community curation.

摘要

所有 DNA 条码方法都依赖于与精心保管的凭证标本相关联的参考序列。DNA 条码参考库的定义和位置没有标准化,在文献中也各不相同。标准化和集中参考标本将提供一个类似于参考基因组的明确来源,以重现鉴定并改善库。本章提出了 DNA 条码参考库的工作定义,与 DNA 条码数据标准一致,以及在制作或使用此类库时应考虑的原则和方法。这些方法允许明确追溯到序列来源,从而提高凭证标本的价值,并为社区管理创造潜力。

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