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利用环境 DNA metabarcoding 调查奥斯陆峡湾鱼类群落组成及其季节性变化。

Harnessing eDNA metabarcoding to investigate fish community composition and its seasonal changes in the Oslo fjord.

机构信息

Natural History Museum, University of Oslo, Oslo, Norway.

Group for Integrated Biological Investigation, Center for Advanced Studies of Biodiversity, Federal University of Pará, Belém, Brazil.

出版信息

Sci Rep. 2024 May 2;14(1):10154. doi: 10.1038/s41598-024-60762-8.

Abstract

In the face of global ecosystem changes driven by anthropogenic activities, effective biomonitoring strategies are crucial for mitigating impacts on vulnerable aquatic habitats. Time series analysis underscores a great significance in understanding the dynamic nature of marine ecosystems, especially amidst climate change disrupting established seasonal patterns. Focusing on Norway's Oslo fjord, our research utilises eDNA-based monitoring for temporal analysis of aquatic biodiversity during a one year period, with bi-monthly sampling along a transect. To increase the robustness of the study, a taxonomic assignment comparing BLAST+ and SINTAX approaches was done. Utilising MiFish and Elas02 primer sets, our study detected 63 unique fish species, including several commercially important species. Our findings reveal a substantial increase in read abundance during specific migratory cycles, highlighting the efficacy of eDNA metabarcoding for fish composition characterization. Seasonal dynamics for certain species exhibit clear patterns, emphasising the method's utility in unravelling ecological complexities. eDNA metabarcoding emerges as a cost-effective tool with considerable potential for fish community monitoring for conservation purposes in dynamic marine environments like the Oslo fjord, contributing valuable insights for informed management strategies.

摘要

面对人为活动驱动的全球生态系统变化,有效的生物监测策略对于减轻脆弱水生栖息地的影响至关重要。时间序列分析在理解海洋生态系统的动态性质方面具有重要意义,特别是在气候变化破坏既定季节模式的情况下。本研究以挪威的奥斯陆峡湾为重点,利用基于 eDNA 的监测方法,在一年的时间内对水生生物多样性进行时间分析,沿横断面进行双月采样。为了提高研究的稳健性,我们进行了 BLAST+ 和 SINTAX 方法的分类分配比较。使用 MiFish 和 Elas02 引物对,我们的研究检测到 63 种独特的鱼类物种,包括几种具有商业重要性的物种。我们的研究结果表明,在特定的洄游周期内,阅读丰度显著增加,这突出了 eDNA 代谢组学在鱼类组成特征描述方面的有效性。某些物种的季节性动态表现出明显的模式,强调了该方法在揭示生态复杂性方面的实用性。eDNA 代谢组学是一种具有成本效益的工具,具有很大的潜力用于动态海洋环境中的鱼类群落监测,为明智的管理策略提供有价值的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f72e/11065990/9b7c5b0cbb26/41598_2024_60762_Fig1_HTML.jpg

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