Suppr超能文献

一种用于快速检测泰国 SARS-CoV-2 的比色逆转录环介导等温扩增 (RT-LAMP) 方法。

A colorimetric reverse transcription-loop mediated isothermal amplification (RT-LAMP) method for the rapid detection of SARS-CoV-2 in Thailand.

机构信息

National Institute of Health, Department of Medical Sciences, Ministry of Public Health, Nonthaburi, Thailand.

Regional Medical Sciences Center 11/1 Phuket, Department of Medical Sciences, Ministry of Public Health, Nonthaburi, Thailand.

出版信息

Trop Biomed. 2024 Mar 1;41(1):64-69. doi: 10.47665/tb.41.1.008.

Abstract

COVID-19, caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), remains a global health threat. Timely identification of infected cases is important for appropriate patient management and the control of viral spread. Simple and cost-effective tests are required to increase access to testing and early case detection. Here, we describe a colorimetric reverse transcription-loop-mediated isothermal amplification (RT-LAMP) method to detect SARS-CoV-2. The RT-LAMP could amplify the orf1ab sequence detectable by visual color change within 45 min at 63 °C. The limit of detection (LoD) for SARS-CoV-2 RNA was less than 100 copies (13.36) per reaction with no cross-amplification with other related viruses. Clinical evaluation using leftover RNA samples extracted from 163 nasopharyngeal swab specimens showed perfect agreement in negative (n = 124) and positive samples with cycle thresholds (Ct) < 34 cycles (n = 33) detected by real-time reverse transcription-polymerase chain reaction (RT-PCR), targeting RdRp and N genes as a reference. Overall, the diagnostic accuracy, sensitivity, specificity, positive and negative predictive values of RT-LAMP in testing were 96.32% (95% CI: 92.16-98.64%), 84.62% (95% CI: 68.47-94.14%), 100% (95% CI: 97.07-100.0%), 100% (95% CI: 89.42-100.0%), and 95.38% (95% CI: 90.22-98.29), respectively. This RT-LAMP assay is simple and reliable, with the potential to be an alternative for the rapid detection of SAR-CoV-2 with minimal time and fewer resources compared to real-time RT-PCR.

摘要

新型冠状病毒肺炎(COVID-19)由严重急性呼吸综合征冠状病毒 2(SARS-CoV-2)引起,仍然是全球健康威胁。及时识别感染病例对于适当的患者管理和病毒传播的控制非常重要。需要简单且具有成本效益的检测方法来增加检测机会并尽早发现病例。在这里,我们描述了一种基于比色逆转录环介导等温扩增(RT-LAMP)的方法来检测 SARS-CoV-2。RT-LAMP 可以在 63°C 下 45 分钟内通过视觉颜色变化扩增可检测的orf1ab 序列。SARS-CoV-2 RNA 的检测限(LoD)低于每个反应 100 个拷贝(13.36),与其他相关病毒没有交叉扩增。使用从 163 个鼻咽拭子标本中提取的剩余 RNA 样本进行临床评估,与实时逆转录聚合酶链反应(RT-PCR)检测的 RdRp 和 N 基因作为参考的阴性(n=124)和阳性样本(Ct<34 个周期)完全一致。总体而言,RT-LAMP 检测的诊断准确性、灵敏度、特异性、阳性和阴性预测值分别为 96.32%(95%CI:92.16-98.64%)、84.62%(95%CI:68.47-94.14%)、100%(95%CI:97.07-100.0%)、100%(95%CI:89.42-100.0%)和 95.38%(95%CI:90.22-98.29%)。这种 RT-LAMP 检测方法简单可靠,与实时 RT-PCR 相比,具有在更短的时间内使用更少的资源快速检测 SARS-CoV-2 的潜力。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验