Bacon Emily E, Tran Jennifer S, Nadig Nischala, Peters Jason M
Pharmaceutical Sciences Division, School of Pharmacy, University of Wisconsin-Madison, Madison, WI 53705.
Microbiology Doctoral Training Program, University of Wisconsin-Madison, Madison, WI 53706.
bioRxiv. 2024 May 29:2024.05.28.596346. doi: 10.1101/2024.05.28.596346.
Gene expression systems that transcend species barriers are needed for cross-species analysis of gene function. In particular, expression systems that can be utilized in both model and pathogenic bacteria underpin comparative functional approaches that inform conserved and variable features of bacterial physiology. Here, we develop replicative and integrative vectors alongside a novel, IPTG-inducible promoter that can be used in the model bacterium K-12 as well as strains of the antibiotic-resistant pathogen, We generate modular vectors that transfer by conjugation at high efficiency and either replicate or integrate into the genome, depending on design. Embedded in these vectors, we also developed a synthetic, IPTG-inducible promoter, P , that induces to a high level, but is less leaky than the commonly used promoter. We show that P is titratable at both the population and single cell level, regardless of species, highlighting the utility of our expression systems for cross-species functional studies. Finally, as a proof of principle, we use our integrating vector to develop a reporter for the envelope stress σ factor, RpoE, and deploy the reporter in and , finding that does not recognize RpoE-dependent promoters unless RpoE is heterologously expressed. We envision that these vector and promoter tools will be valuable for the community of researchers that study fundamental biology of and .
跨物种基因功能分析需要超越物种屏障的基因表达系统。特别是,能够在模式细菌和致病菌中都可利用的表达系统,是支撑比较功能研究方法的基础,这些方法有助于了解细菌生理学的保守和可变特征。在此,我们开发了复制型和整合型载体以及一种新型的异丙基-β-D-硫代半乳糖苷(IPTG)诱导型启动子,该启动子可用于模式细菌K-12以及抗生素抗性病原菌的菌株。我们构建了模块化载体,这些载体通过接合高效转移,并且根据设计可复制或整合到基因组中。在这些载体中,我们还开发了一种合成的IPTG诱导型启动子P,它能高水平诱导,但比常用启动子的渗漏性更低。我们表明,无论物种如何,P在群体和单细胞水平上都是可滴定的,这突出了我们的表达系统在跨物种功能研究中的实用性。最后,作为原理验证,我们使用我们的整合载体开发了一种用于包膜应激σ因子RpoE的报告基因,并将该报告基因应用于和,发现除非RpoE异源表达,否则不识别RpoE依赖性启动子。我们设想,这些载体和启动子工具对于研究和基础生物学的研究人员群体将是有价值的。