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通过计算建模揭示的芳香族脂肪族聚酯的区域选择性酶解。

Regioselective enzymatic depolymerization of aromatic-aliphatic polyester revealed by computational modelling.

机构信息

Environment Research Institute, Shandong University, Qingdao 266237, PR China.

Environment Research Institute, Shandong University, Qingdao 266237, PR China.

出版信息

J Hazard Mater. 2024 Aug 5;474:134797. doi: 10.1016/j.jhazmat.2024.134797. Epub 2024 Jun 6.

Abstract

Poly(butylene adipate-co-terephthalate) (PBAT) is widely utilized in the production of food packaging and mulch films. Its extensive application has contributed significantly to global solid waste, posing numerous environmental challenges. Recently, enzymatic recycling has emerged as a promising eco-friendly solution for the management of plastic waste. Here, we systematically investigate the depolymerization mechanism of PBAT catalyzed by cutinase TfCut with molecular docking, molecular dynamics simulations, and quantum mechanics/molecular mechanics calculations. Although the binding affinities for acid ester and terephthalic acid ester bonds are similar, a regioselective depolymerization mechanism and a "chain-length" effect on regioselectivity were proposed and evidenced. The regioselectivity is highly associated with specific structural parameters, namely Substrate@O4-Met@H7 and Substrate@C1-Ser@O1 distances. Notably, the binding mode of BTa captured by X-ray crystallography does not facilitate subsequent depolymerization. Instead, a previously unanticipated binding mode, predicted through computational analysis, is confirmed to play a crucial role in BTa depolymerization. This finding proves the critical role of computational modelling in refining experimental results. Furthermore, our results revealed that both the hydrogen bond network and enzyme's intrinsic electric field are instrumental in the formation of the final product. In summary, these novel molecular insights into the PBAT depolymerization mechanism offer a fundamental basis for enzyme engineering to enhance industrial plastic recycling.

摘要

聚己二酸/对苯二甲酸丁二酯(PBAT)广泛用于食品包装和覆盖膜的生产。它的广泛应用对全球固体废物产生了重大影响,带来了许多环境挑战。最近,酶法回收作为一种有前途的环保塑料废物管理解决方案已经出现。在这里,我们系统地研究了脂肪酶 TfCut 催化 PBAT 解聚的机制,使用了分子对接、分子动力学模拟和量子力学/分子力学计算。尽管对酸酯键和对苯二甲酸酯键的结合亲和力相似,但提出并证明了一种区域选择性解聚机制和对区域选择性的“链长”效应。区域选择性与特定的结构参数高度相关,即 Substrate@O4-Met@H7 和 Substrate@C1-Ser@O1 距离。值得注意的是,X 射线晶体学捕捉到的 BTa 的结合模式不利于随后的解聚。相反,通过计算分析预测的一种以前未预料到的结合模式被证实对 BTa 解聚起着关键作用。这一发现证明了计算建模在完善实验结果方面的关键作用。此外,我们的结果表明,氢键网络和酶的固有电场在最终产物的形成中都起着重要作用。总之,这些关于 PBAT 解聚机制的新分子见解为酶工程增强工业塑料回收提供了基础。

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