Department of Pathology and Biomedical Science, Mātai Hāora - Centre for Redox Biology and Medicine, University of Otago, Christchurch, New Zealand.
Department of Pathology and Molecular Medicine, Genetics and Epigenetics Research Group, University of Otago, Wellington, New Zealand.
Epigenetics. 2024 Dec;19(1):2367385. doi: 10.1080/15592294.2024.2367385. Epub 2024 Jun 20.
This research investigates the intricate dynamics of DNA methylation in the hours following CD8+ T cell activation, during a critical yet understudied temporal window. DNA methylation is an epigenetic modification central to regulation of gene expression and directing immune responses. Our investigation spanned 96-h post-activation and unveils a nuanced tapestry of global and site-specific methylation changes. We identified 15,626 significant differentially methylated CpGs spread across the genome, with the most significant changes occurring within the genes , , and . While many changes had modest effect sizes, approximately 120 CpGs exhibited a logFC above 1.5, with cell activation and proliferation pathways the most affected. Relatively few of the differentially methylated CpGs occurred along adjacent gene regions. The exceptions were seven differentially methylated gene regions, with the Human T cell Receptor Alpha Joining Genes demonstrating consistent methylation change over a 3kb window. We also investigated whether an inflammatory environment could alter DNA methylation during activation, with proliferating cells exposed to the oxidant glycine chloramine. No substantial differential methylation was observed in this context. The temporal perspective of early activation adds depth to the evolving field of epigenetic immunology, offering insights with implications for therapeutic innovation and expanding our understanding of epigenetic modulation in immune function.
本研究调查了 CD8+T 细胞激活后数小时内 DNA 甲基化的复杂动态,这是一个关键但研究不足的时间窗口。DNA 甲基化是一种表观遗传修饰,对基因表达的调控和免疫反应的指导至关重要。我们的研究跨越了激活后 96 小时,揭示了全基因组和特定位点甲基化变化的微妙图案。我们在整个基因组中鉴定出 15626 个显著差异甲基化的 CpG 位点,其中基因 、 和 中的变化最为显著。虽然许多变化的效应大小适中,但约有 120 个 CpG 表现出超过 1.5 的 logFC,细胞激活和增殖途径受影响最大。差异甲基化的 CpG 相对较少发生在相邻的基因区域。例外的是七个差异甲基化的基因区域,人类 T 细胞受体α连接基因在 3kb 窗口内表现出一致的甲基化变化。我们还研究了在激活过程中炎症环境是否会改变 DNA 甲基化,将增殖细胞暴露于氧化剂甘氨酸氯胺中。在这种情况下,没有观察到明显的差异甲基化。早期激活的时间视角为不断发展的表观遗传学免疫学领域增添了深度,为治疗创新提供了见解,并扩展了我们对免疫功能中表观遗传调节的理解。