Suppr超能文献

MGST1可能调控椎间盘纤维环的铁死亡:生物信息学综合分析与验证

MGST1 May Regulate the Ferroptosis of the Annulus Fibrosus of Intervertebral Disc: Bioinformatic Integrated Analysis and Validation.

作者信息

Huo Zhenxin, Li Dawei, Zhang Kaihui, Yan Bingshan, Zhang Tongxing, Li Zhenhua, Huang Shengbo, Liu Yue, Xu Baoshan

机构信息

Department of Graduate School, Tianjin Medical University, 300070 Tianjin, China.

Department of Minimally Invasive Spine Surgery, Tianjin Hospital, Tianjin University, 300211 Tianjin, China.

出版信息

Front Biosci (Landmark Ed). 2024 Jun 21;29(6):224. doi: 10.31083/j.fbl2906224.

Abstract

BACKGROUND

The objective of this research was to identify differentially expressed genes (DEGs) related to ferroptosis in the annulus fibrosus (AF) during intervertebral disc degeneration (IDD).

METHODS

We analyzed gene data from degenerated and normal AF obtained from the GSE70362 and GSE147383 datasets. An analysis to determine the functional significance of the DEGs was conducted, followed by the creation of a network illustrating the interactions between proteins. We further analyzed the immune infiltration of the DEGs and determined the hub DEGs using LASSO regression analysis. Finally, we identified the hub ferroptosis-related DEGs (FRDEGs) and verified their expression levels using Real-time quantitative polymerase chain reaction (RT-qPCR), Western blot, Immunohistochemical Staining (IHC), and Immunofluorescence (IF).

RESULTS

By analyzing the GSE70362 and GSE147383 datasets, we identified 118 DEGs. In degenerative AF groups, we observed a significant increase in immune infiltration of resting memory CD4+ T cells. LASSO regression analysis revealed 9 hub DEGs. The construction of a Receiver Operating Characteristic (ROC) curve yielded an Area Under the Curve (AUC) value of 0.762. Furthermore, we found that is a hub gene related to ferroptosis. Our examination of immune infiltration indicated that primarily influences macrophage M0 in different immune cell expression groups. Finally, our observations revealed a marked upregulation of expression in the degenerated annulus fibrosus tissue.

CONCLUSION

Our findings indicate an upsurge in levels within degenerative AF, potentially playing a crucial role in the exacerbation of IDD. These findings provide a foundation for further exploration of the pathological mechanisms underlying IDD and offer potential drug targets for intervention.

摘要

背景

本研究的目的是鉴定椎间盘退变(IDD)过程中纤维环(AF)中与铁死亡相关的差异表达基因(DEG)。

方法

我们分析了从GSE70362和GSE147383数据集中获得的退变和正常AF的基因数据。对DEG的功能意义进行了分析,随后构建了一个展示蛋白质之间相互作用的网络。我们进一步分析了DEG的免疫浸润情况,并使用LASSO回归分析确定了枢纽DEG。最后,我们鉴定了枢纽铁死亡相关DEG(FRDEG),并通过实时定量聚合酶链反应(RT-qPCR)、蛋白质印迹、免疫组织化学染色(IHC)和免疫荧光(IF)验证了它们的表达水平。

结果

通过分析GSE70362和GSE147383数据集,我们鉴定出118个DEG。在退变的AF组中,我们观察到静息记忆CD4+T细胞的免疫浸润显著增加。LASSO回归分析揭示了9个枢纽DEG。构建的受试者工作特征(ROC)曲线的曲线下面积(AUC)值为0.762。此外,我们发现[具体基因名称未给出]是一个与铁死亡相关的枢纽基因。我们对免疫浸润的研究表明,[具体基因名称未给出]主要影响不同免疫细胞表达组中的巨噬细胞M0。最后,我们的观察结果显示退变的纤维环组织中[具体基因名称未给出]的表达明显上调。

结论

我们的研究结果表明退变的AF中[具体基因名称未给出]水平升高,可能在IDD的加重中起关键作用。这些发现为进一步探索IDD的病理机制提供了基础,并为干预提供了潜在的药物靶点。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验